Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12i14
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.51 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.3  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   8.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.3  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 314 WKPVAVF*SATRKSSYTLVIILRILHVYCDRTTRYVLK 201
           W+P + F +A   +  T+ I    L +Y D+T  Y++K
Sbjct: 119 WRPDSFFKNAKSVTFQTMTIPNHYLWLYKDKTILYMVK 156


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 314 WKPVAVF*SATRKSSYTLVIILRILHVYCDRTTRYVLK 201
           W+P   F +A + + + + I    L +Y D+T  Y+ K
Sbjct: 88  WRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSK 125


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = -2

Query: 681 HINWDDYYTHXNNPSWTD 628
           HI W DY     N  W D
Sbjct: 560 HIEWFDYAFIPGNLKWLD 577


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 613 CGYIIISPRWIVTVSVIIV 669
           CG  IIS R+++T +  I+
Sbjct: 188 CGATIISKRYVLTAAHCII 206


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 210 RFKGTLSNENRPYNIGAKDLTIRGYEIN 127
           +  G    + +   +GA+ L+IRG +IN
Sbjct: 86  QMSGAKQKKKKRSLMGAQGLSIRGLQIN 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,009
Number of Sequences: 438
Number of extensions: 4138
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)