Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12i09
         (363 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   3.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   4.5  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   5.9  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        20   7.8  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 27  NIEQVGDFLFILISINDNILKAQQHHAFINFSLL 128
           N  Q  ++L  L   N N+L    +   +NF +L
Sbjct: 368 NNTQRNEYLLALSDRNQNVLNNDLNLEHVNFQIL 401


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 232 SILKL*ECHELTNLHLV 282
           S L++ E HEL N+H V
Sbjct: 444 SALRILEKHELANVHPV 460


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
          peptide protein.
          Length = 50

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 94 CAFKILSLMLIKMKRKSPTCSI 29
          C F  LS++LI     +PT SI
Sbjct: 7  CTFFFLSVILITSYFVTPTMSI 28


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +1

Query: 148 NVFFNIHVFLIHQF 189
           NV++N+  F+ H++
Sbjct: 44  NVYWNVPTFMCHKY 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,990
Number of Sequences: 438
Number of extensions: 1718
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)