Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12i07
         (166 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    23   4.1  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    23   5.4  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    23   7.1  
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    23   7.1  
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces...    23   7.1  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    23   7.1  
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch...    22   9.4  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    22   9.4  

>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 155 EYVPILNGTKHFHFSAEDLLS 93
           EY+ + +G K+FH   +D L+
Sbjct: 63  EYIKLQDGWKNFHMRPDDQLA 83


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 142 FLTELNIFIFLPRICLVXALFVDWDAAEEC 53
           FL   +IFI   R  L   L+ +WD A  C
Sbjct: 323 FLAIKDIFIACIRRSLAYPLYRNWDLALTC 352


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 116 FSAEDLLSXCPICG 75
           +SA+  +  CP+CG
Sbjct: 163 YSADKAIESCPVCG 176


>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 1   LPPDTXPKCFQYSQASL 51
           L P+T PKCF+     L
Sbjct: 108 LDPETAPKCFECDSIEL 124


>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 147

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 40  QASLGIPPLHPSPQIGXQLSKSSAE 114
           ++SLG P  H +PQI    + S+ E
Sbjct: 6   KSSLGRPEQHQTPQIRISPASSNVE 30


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -3

Query: 83  ICGLGCSGGMPRLAWEYWKHFGXVSGG 3
           +C LG +     + + YWK  G  + G
Sbjct: 194 LCNLGVNNEKKFIGFRYWKDPGAFNNG 220


>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 198

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 149 VPILNGTKHFHF 114
           VPIL GTK+ HF
Sbjct: 116 VPILIGTKYDHF 127


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 58  PPLHPSPQIGXQLSKSSAE 114
           PP+HP P +   LS  + E
Sbjct: 270 PPVHPPPPVPQNLSAVNEE 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 649,823
Number of Sequences: 5004
Number of extensions: 8893
Number of successful extensions: 29
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 35
effective length of database: 2,187,338
effective search space used: 41559422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)