Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12i06
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    27   4.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   5.4  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.4  

>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -2

Query: 666 IISKMPQTNGCQLRTKPRIILSSIDFYLSVIGNCLVFLGFVIGKINSDNQYTFFI 502
           II ++P +N      +PRI +S I   + V+G C   LG   G   S     FF+
Sbjct: 141 IIFEVP-SNLMMAFIEPRIWVSRIQLTIGVVGACHAVLGTKHGNAQSYVALRFFL 194


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -2

Query: 492  LILLGHLVAL---MTELTTLYEDYLCLKNGK 409
            L L GH   +   MT++ T+ EDYL  KN K
Sbjct: 1199 LFLTGHKTLMFFQMTQIMTIMEDYLRSKNWK 1229


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 31/103 (30%), Positives = 40/103 (38%)
 Frame = -2

Query: 666 IISKMPQTNGCQLRTKPRIILSSIDFYLSVIGNCLVFLGFVIGKINSDNQYTFFISNLLI 487
           II  +P +N    R  PR+ LS I     +IG C   LG      +      FF  N L 
Sbjct: 213 IIFDLP-SNLLMTRADPRLWLSRIQVTTGIIGACHAVLGTKGSSASGFIALRFF--NGLA 269

Query: 486 LLGHLVALMTELTTLYEDYLCLKNGKRDYEINSYFTFANILSI 358
           + G         +  Y D      GKR   I  Y+T A I S+
Sbjct: 270 IAGMWPGFAFYTSRFYRDQ---HLGKR---IGWYYTAAQISSV 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,397,602
Number of Sequences: 5004
Number of extensions: 72941
Number of successful extensions: 161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)