Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12i04
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    31   0.14 
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    27   2.2  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   3.9  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   6.8  
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    25   9.0  

>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 9/154 (5%)
 Frame = -3

Query: 694 AKLYKQTKPNNWHKEILPASTPHTKDLLRLIVVIKKRSTNRLH--VLLSEKTSIHFPT-- 527
           +K Y + K  +    IL A TP+ ++ LR I  +KK +   LH  + +    ++   T  
Sbjct: 47  SKSYTKQKVVSLGNRILHA-TPYEENFLRAIAPVKKLNDTELHQTLYIEHPPNLESSTIL 105

Query: 526 SEINPNKSLHSTLRRFMVEMFGADVSQHRPLGLLNVEADPSADG--CCLTLLVAFRSPLE 353
           +E+N +K L  T   +++   G  +     +  + +   P+  G   C      FR+   
Sbjct: 106 AELNRSKQLQKTHTNYLI---GNIIGLPLTIPFILIPLIPNIPGFYLCYRAYCNFRAIQG 162

Query: 352 EVPLIGKCAWQEVS-QELEK--KLLIMITNKNST 260
            + L    + + +  QE EK  K L + TN ++T
Sbjct: 163 SIQLARVMSIENIQMQESEKLEKALKLFTNGDAT 196


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 382 LLVAFRSPLEEVPLIGKCAWQEVSQELEKKLLIMITNKNSTIELH 248
           LL+AF     ++ ++GK  W +    L+   +    N   ++ELH
Sbjct: 516 LLLAFSKSTSDLQVVGKSGWHKYWVVLDHGKICEYANWKQSLELH 560


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 398  ISTWICLYVKQTKWSMLTHICS 463
            +S  +CL    T+WS++ H C+
Sbjct: 1767 LSNHLCLTASSTEWSLIKHWCN 1788


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 23/63 (36%), Positives = 34/63 (53%)
 Frame = -3

Query: 532 PTSEINPNKSLHSTLRRFMVEMFGADVSQHRPLGLLNVEADPSADGCCLTLLVAFRSPLE 353
           P+S++N  KSL+  L+ F V+    DV    P GLL ++ +          L AFRSP+ 
Sbjct: 400 PSSDLNSLKSLN--LQSF-VKNICCDVPLP-PKGLLQLQVNVGPLN-----LYAFRSPVN 450

Query: 352 EVP 344
           E+P
Sbjct: 451 EIP 453


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 706 LIEKAKLYKQTKPNNWHKEILPASTPHTKDLLRLIVVIKKRST 578
           L++   L +  KP  W K   PAST   +   + ++   KRST
Sbjct: 47  LVKPTMLSEVQKPTLWEKLTKPASTSSPEQRQKELLNEMKRST 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,937
Number of Sequences: 5004
Number of extensions: 57493
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)