Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12i04
         (768 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK026147-1|BAB15376.1|  223|Homo sapiens protein ( Homo sapiens ...    44   6e-04
BC016902-1|AAH16902.1|  323|Homo sapiens nudix (nucleoside dipho...    43   0.001
AK124446-1|BAC85853.1|  539|Homo sapiens protein ( Homo sapiens ...    43   0.001
L10918-1|AAA36543.1|  355|Homo sapiens macrophage inflammatory p...    31   3.4  
L09230-1|AAA58408.1|  355|Homo sapiens C-C chemokine receptor ty...    31   3.4  
D10925-1|BAA01723.1|  355|Homo sapiens HM145 protein.                  31   3.4  
BT019909-1|AAV38712.1|  355|Homo sapiens chemokine (C-C motif) r...    31   3.4  
BT019908-1|AAV38711.1|  355|Homo sapiens chemokine (C-C motif) r...    31   3.4  
BC064991-1|AAH64991.1|  355|Homo sapiens chemokine (C-C motif) r...    31   3.4  
BC051306-1|AAH51306.2|  355|Homo sapiens chemokine (C-C motif) r...    31   3.4  
AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone recepto...    31   6.0  

>AK026147-1|BAB15376.1|  223|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22494 fis, clone HRC11131. ).
          Length = 223

 Score = 44.0 bits (99), Expect = 6e-04
 Identities = 53/176 (30%), Positives = 78/176 (44%), Gaps = 16/176 (9%)
 Frame = -3

Query: 766 QAKWISSLEEIT-LRANDIIHLIEKAKLYKQTKPNNWHKEILPASTPHTKDLLRLIVVIK 590
           QA W       T LRA+DI+HL+E A  Y+Q      H  ILP   P      RL+    
Sbjct: 41  QAAWYPRTSLPTPLRAHDILHLVELAAQYRQQAR---HPPILPQELPCDLVCQRLVATFT 97

Query: 589 KRSTNRLHVLLSEKTSIHFPTS-----EINPNKSLHSTLRRFMVE---MFGADVSQHRPL 434
              T  + VL+      H P +      +     +   + R + E   +    V     L
Sbjct: 98  SAQT--VWVLVGTVGMPHLPVTACGLDPVEQRGGMKMAVLRLLQECLTLHHLVVEIKGLL 155

Query: 433 GLLNVEADPSADGCCLTLL--VAFRSP--LEEVPLI-GK--CAWQEVSQELEKKLL 287
           GL ++  D S DG CL +L  VAFRSP   +E P + G+    W+ + ++L+ +LL
Sbjct: 156 GLQHLGRDHS-DGICLNVLVTVAFRSPGIQDEPPKVRGENFSWWKVMEEDLQSQLL 210


>BC016902-1|AAH16902.1|  323|Homo sapiens nudix (nucleoside
           diphosphate linked moiety X)-type motif 18 protein.
          Length = 323

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 16/176 (9%)
 Frame = -3

Query: 766 QAKWISSLEEIT-LRANDIIHLIEKAKLYKQTKPNNWHKEILPASTPHTKDLLRLIVVIK 590
           QA W       T LRA+DI+HL+E A  Y+Q      H  ILP   P      RL+    
Sbjct: 141 QAAWYPRTSLPTPLRAHDILHLVELAAQYRQQAR---HPLILPQELPCDLVCQRLVATFT 197

Query: 589 KRSTNRLHVLLSEKTSIHFPTSE--INPNK---SLHSTLRRFMVE---MFGADVSQHRPL 434
              T  + VL+      H P +   ++P +    +   + R + E   +    V     L
Sbjct: 198 SAQT--VWVLVGTVGMPHLPVTACGLDPMEQRGGMKMAVLRLLQECLTLHHLVVEIKGLL 255

Query: 433 GLLNVEADPSADGCCLTLL--VAFRSP--LEEVPLI-GK--CAWQEVSQELEKKLL 287
           GL ++  D S DG CL +L  VAFRSP   +E P + G+    W+ + ++L+ +LL
Sbjct: 256 GLQHLGRDHS-DGICLNVLVTVAFRSPGIQDEPPKVRGENFSWWKVMEEDLQSQLL 310


>AK124446-1|BAC85853.1|  539|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42455 fis, clone BRACE2015314. ).
          Length = 539

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 53/176 (30%), Positives = 78/176 (44%), Gaps = 16/176 (9%)
 Frame = -3

Query: 766 QAKWISSLEEIT-LRANDIIHLIEKAKLYKQTKPNNWHKEILPASTPHTKDLLRLIVVIK 590
           QA W       T LRA+DI+HL+E A  Y+Q      H  ILP   P      RL+    
Sbjct: 357 QAAWYPRTSLPTPLRAHDILHLVELAAQYRQQAR---HPLILPQELPCDLVCQRLVATFT 413

Query: 589 KRSTNRLHVLLSEKTSIHFPTS-----EINPNKSLHSTLRRFMVE---MFGADVSQHRPL 434
              T  + VL+      H P +      +     +   + R + E   +    V     L
Sbjct: 414 SAQT--VWVLVGTVGMPHLPVTACGLDPVEQRGGMKMAVLRLLQECLTLHHLVVEIKGLL 471

Query: 433 GLLNVEADPSADGCCLTLL--VAFRSP--LEEVPLI-GK--CAWQEVSQELEKKLL 287
           GL ++  D S DG CL +L  VAFRSP   +E P + G+    W+ + ++L+ +LL
Sbjct: 472 GLQHLGRDHS-DGICLNVLVTVAFRSPGIQDEPPKVRGENFSWWKVMEEDLQSQLL 526


>L10918-1|AAA36543.1|  355|Homo sapiens macrophage inflammatory
           protein-1-alpha protein.
          Length = 355

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 416 LYVKQTKWSMLTHICSKHFNHKS 484
           LY  +T+W    H CS HF H+S
Sbjct: 169 LYFSKTQWEFTHHTCSLHFPHES 191


>L09230-1|AAA58408.1|  355|Homo sapiens C-C chemokine receptor type
           1 protein.
          Length = 355

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 416 LYVKQTKWSMLTHICSKHFNHKS 484
           LY  +T+W    H CS HF H+S
Sbjct: 169 LYFSKTQWEFTHHTCSLHFPHES 191


>D10925-1|BAA01723.1|  355|Homo sapiens HM145 protein.
          Length = 355

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 416 LYVKQTKWSMLTHICSKHFNHKS 484
           LY  +T+W    H CS HF H+S
Sbjct: 169 LYFSKTQWEFTHHTCSLHFPHES 191


>BT019909-1|AAV38712.1|  355|Homo sapiens chemokine (C-C motif)
           receptor 1 protein.
          Length = 355

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 416 LYVKQTKWSMLTHICSKHFNHKS 484
           LY  +T+W    H CS HF H+S
Sbjct: 169 LYFSKTQWEFTHHTCSLHFPHES 191


>BT019908-1|AAV38711.1|  355|Homo sapiens chemokine (C-C motif)
           receptor 1 protein.
          Length = 355

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 416 LYVKQTKWSMLTHICSKHFNHKS 484
           LY  +T+W    H CS HF H+S
Sbjct: 169 LYFSKTQWEFTHHTCSLHFPHES 191


>BC064991-1|AAH64991.1|  355|Homo sapiens chemokine (C-C motif)
           receptor 1 protein.
          Length = 355

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 416 LYVKQTKWSMLTHICSKHFNHKS 484
           LY  +T+W    H CS HF H+S
Sbjct: 169 LYFSKTQWEFTHHTCSLHFPHES 191


>BC051306-1|AAH51306.2|  355|Homo sapiens chemokine (C-C motif)
           receptor 1 protein.
          Length = 355

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 416 LYVKQTKWSMLTHICSKHFNHKS 484
           LY  +T+W    H CS HF H+S
Sbjct: 169 LYFSKTQWEFTHHTCSLHFPHES 191


>AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone
           receptor-associated protein complex component TRAP220
           protein.
          Length = 1581

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 529 TSEINPNKSLHSTLRRFMVEMFGADVSQHRPLGLLNVEAD 410
           +S + P K  H T   F  E+F  DV   +P+  +N+ AD
Sbjct: 692 SSRLPPEKPKHQTEDDFQRELFSMDVDSQKPIFDVNMTAD 731


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,395,793
Number of Sequences: 237096
Number of extensions: 1793860
Number of successful extensions: 2959
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2953
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)