Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12i04
(768 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 26 0.34
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 24 1.8
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 23 4.1
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 23 4.1
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 23 4.1
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 23 4.1
AM158085-1|CAJ43389.1| 171|Apis mellifera globin 1 protein. 23 4.1
AM158084-1|CAJ43388.1| 171|Apis mellifera globin 1 protein. 23 4.1
M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee homeobox-... 22 5.5
M29493-1|AAA27728.1| 74|Apis mellifera protein ( Bee homeobox-... 22 5.5
M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee homeobox-... 22 5.5
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 22 5.5
S78459-1|AAB34403.1| 50|Apis mellifera mast cell-degranulating... 22 7.2
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 22 7.2
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 26.2 bits (55), Expect = 0.34
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 547 TSIHFPT-SEINPNKSLHSTLRRFMVEMFGADVSQHRPLGLLNVEADPSADGCCLT 383
TSI + T +EI T + E+ D S+ LGL +V+A+P + G T
Sbjct: 129 TSIPYATRAEIKTESIQPETTKVDTREVQPHDASEKEQLGLASVKAEPGSTGTTTT 184
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 23.8 bits (49), Expect = 1.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 305 FLGYFLPSTFTDKRDFLKRRSKC 373
F GYFL S D DF+++ +C
Sbjct: 123 FNGYFLNSESKDFIDFIQKNLQC 145
Score = 21.4 bits (43), Expect = 9.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 600 TINLSKSFV*GVEAGKISLCQLLGFVCL*SLAFSIR 707
T+ L+ + V G A I++ +L+G +C LA SI+
Sbjct: 189 TVKLAGT-VFGSVAIAIAIVELIGIICALCLANSIK 223
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 22.6 bits (46), Expect = 4.1
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +3
Query: 687 SLAFSIRCMISLALNVIS 740
SL F+I C+++LAL +++
Sbjct: 30 SLIFTILCILTLALTLVT 47
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 22.6 bits (46), Expect = 4.1
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +3
Query: 687 SLAFSIRCMISLALNVIS 740
SL F+I C+++LAL +++
Sbjct: 30 SLIFTILCILTLALTLVT 47
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 22.6 bits (46), Expect = 4.1
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +3
Query: 687 SLAFSIRCMISLALNVIS 740
SL F+I C+++LAL +++
Sbjct: 30 SLIFTILCILTLALTLVT 47
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 22.6 bits (46), Expect = 4.1
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +3
Query: 687 SLAFSIRCMISLALNVIS 740
SL F+I C+++LAL +++
Sbjct: 30 SLIFTILCILTLALTLVT 47
>AM158085-1|CAJ43389.1| 171|Apis mellifera globin 1 protein.
Length = 171
Score = 22.6 bits (46), Expect = 4.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 591 KREVQTDYMYYLVKKHQYISQLLK*ILIKVYTPLYEDLWLKCLEQM 454
K+ QT + +K + + ++L+ L K YTP + W K L+ M
Sbjct: 118 KKRGQTKEEFQNLK--EVMLEVLRQALGKQYTPEVAEAWNKTLDMM 161
>AM158084-1|CAJ43388.1| 171|Apis mellifera globin 1 protein.
Length = 171
Score = 22.6 bits (46), Expect = 4.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 591 KREVQTDYMYYLVKKHQYISQLLK*ILIKVYTPLYEDLWLKCLEQM 454
K+ QT + +K + + ++L+ L K YTP + W K L+ M
Sbjct: 118 KKRGQTKEEFQNLK--EVMLEVLRQALGKQYTPEVAEAWNKTLDMM 161
>M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H15. ).
Length = 74
Score = 22.2 bits (45), Expect = 5.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 450 VNIDHLVCLT*RQIQV 403
+ I H +CLT RQI++
Sbjct: 39 IEIAHALCLTERQIKI 54
>M29493-1|AAA27728.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H90. ).
Length = 74
Score = 22.2 bits (45), Expect = 5.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 450 VNIDHLVCLT*RQIQV 403
+ I H +CLT RQI++
Sbjct: 39 IEIAHALCLTERQIKI 54
>M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H55. ).
Length = 86
Score = 22.2 bits (45), Expect = 5.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 450 VNIDHLVCLT*RQIQV 403
+ I H +CLT RQI++
Sbjct: 39 IEIAHALCLTERQIKI 54
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 22.2 bits (45), Expect = 5.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 450 VNIDHLVCLT*RQIQV 403
+ I H +CLT RQI++
Sbjct: 301 IEIAHALCLTERQIKI 316
>S78459-1|AAB34403.1| 50|Apis mellifera mast cell-degranulating
peptide protein.
Length = 50
Score = 21.8 bits (44), Expect = 7.2
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = -1
Query: 672 SLTIGIKKFCLPPHLIQKIC 613
S+ K+ + PH+ +KIC
Sbjct: 27 SIKCNCKRHVIKPHICRKIC 46
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.8 bits (44), Expect = 7.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -3
Query: 385 TLLVAFRSPLEEVPLIGKCAWQEVSQELEKKLLIMITNKNS 263
TLL + P E PL+G Q+ + ++ L + KNS
Sbjct: 482 TLLPQWCLPPREAPLVGVQPHQDSATPADQPLDLSAKPKNS 522
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,020
Number of Sequences: 438
Number of extensions: 3875
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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