Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12h24
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 31 0.19
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 29 0.45
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 29 0.59
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 29 0.59
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 29 0.78
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 29 0.78
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.4
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 28 1.4
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 27 1.8
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo... 27 2.4
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 27 2.4
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 27 3.2
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 27 3.2
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe... 27 3.2
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 26 4.2
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy... 26 5.5
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 26 5.5
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.5
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 25 7.3
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 25 9.7
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 9.7
SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.7
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 9.7
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 25 9.7
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 25 9.7
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 30.7 bits (66), Expect = 0.19
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = -2
Query: 587 EISSXDQQNTDSQLDIGHEETNVQSQDDGNQSPWKRIGNIENEHKVSTSN 438
E+ S + N + D+ +E + DD N + ++ + IENEH++S ++
Sbjct: 200 EVKSVHEFNEPN--DLRQQEESYSDDDDTNVNEFEDVNEIENEHQLSVAD 247
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 29.5 bits (63), Expect = 0.45
Identities = 27/124 (21%), Positives = 62/124 (50%), Gaps = 7/124 (5%)
Frame = -2
Query: 656 QSQLEHNFEQLEDFGQQNNNXHQEISSXD--QQNTDSQLDIGHEE-TNVQSQ-DDGN--- 498
QSQL + Q+E ++ + E+SS + +N ++L + ++ +N+Q + + GN
Sbjct: 819 QSQLNQDKNQIETLNERISAAADELSSMESINKNQANELKLAKQKCSNLQEKINFGNKLA 878
Query: 497 QSPWKRIGNIENEHKVSTSNLEVLPVQKEINHNFQATDYIQQQNNDHLQNKDSEGSEDHN 318
+ ++I ++E + + +T L KE+ D ++ +ND QNK+ + +
Sbjct: 879 KEHTEKISSLEKDLEAATKTASTL--SKELKTVKSENDSLKSVSNDD-QNKEKSVNNEKF 935
Query: 317 QNIN 306
+ ++
Sbjct: 936 KEVS 939
>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 547
Score = 29.1 bits (62), Expect = 0.59
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 380 IQQQNNDHLQNKDSEGSEDHNQN-INISTTPETVTEKP 270
+Q ++ HL+N D+EG ED + N I ST+ KP
Sbjct: 498 VQGESAAHLENVDNEGMEDTSSNDITSSTSSSEGRAKP 535
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 29.1 bits (62), Expect = 0.59
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = -2
Query: 524 NVQSQDDGNQSPWKRIGNIENEHKVSTSNLEVLPVQKEINHNFQATDYIQQQNNDHLQNK 345
N + + GN + GN +H+ S+S+L+ L ++ Q NN++ QN
Sbjct: 565 NNNNSNSGNYNN-NNSGNNNQQHQQSSSSLQGLA--SSFLNSSSGNSNKQNYNNNNNQNY 621
Query: 344 DSEGSEDHNQNINIS 300
+ ++++N N N S
Sbjct: 622 GNNNNQNYNNNNNSS 636
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = -2
Query: 605 NNNXHQEISSXDQQNTDSQLDIGHEETNVQSQDDGNQSPWKRIGNIENEHKVSTSN 438
NN HQ+ SS Q S L+ +N Q+ ++ N + GN N++ + +N
Sbjct: 582 NNQQHQQSSSSLQGLASSFLNSSSGNSNKQNYNNNNN---QNYGNNNNQNYNNNNN 634
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 28.7 bits (61), Expect = 0.78
Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 5/124 (4%)
Frame = -2
Query: 656 QSQLEHNFEQLEDFGQQNNNXHQEISSXDQQNTDSQLDIGHEETNVQSQDDGNQSPWKRI 477
+ Q Q F +NN+ + +S ++ ++ + + D W++
Sbjct: 1421 EDQSRDRTPQSRSFTNENNDNLRSVSRHTRREPQQAQNLNARREHESQKSDR----WRQN 1476
Query: 476 GNIENEHKVSTSNLEVLPVQK--EINH---NFQATDYIQQQNNDHLQNKDSEGSEDHNQN 312
GN+ +VS +N + ++ E NH N D + + D + +D G + QN
Sbjct: 1477 GNVNRNPRVSNNNSTNVSRERSSEANHRTSNDNKRDEV-TEGKDKNKRQDISGESNSRQN 1535
Query: 311 INIS 300
IS
Sbjct: 1536 NAIS 1539
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 28.7 bits (61), Expect = 0.78
Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Frame = -2
Query: 572 DQQNTDSQLDIGHEETNVQS-QDDGNQSP-WKRIGNIENEHKVSTSNLEVLPVQKEINHN 399
D + ++ + +++ N +S Q +G+ S KR+ +E E+ S++ +L QKE
Sbjct: 1003 DYKTEIQEMRLTNQKMNEKSIQQEGSLSESLKRVKKLERENSTLISDVSILKQQKE---E 1059
Query: 398 FQATDYIQQQNNDHLQNKDSEGSEDHNQNINISTTPETVTEKPGFWKSVGSKLSNAKDKV 219
+Q+ ++L+ K + D Q + E++ +K ++ +K + KV
Sbjct: 1060 LSVLKGVQELTINNLEEKVNYLEADVKQLPKLKKELESLNDKDQLYQLQATKNKELEAKV 1119
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 27.9 bits (59), Expect = 1.4
Identities = 32/151 (21%), Positives = 59/151 (39%), Gaps = 1/151 (0%)
Frame = -2
Query: 647 LEHNFEQLEDFGQQNNNXHQEISSXDQQNTDSQLDIGHEETNVQSQDDGNQSPWKRIGNI 468
LE++ ++ E ++ + + + + QN S L HE+ NV S + N+
Sbjct: 130 LENHQQEFERAARRFRSSIAALRNLNTQNNQSTLASNHEDENVSSSGGQEMQDHGSVNNL 189
Query: 467 ENEHKVSTSNLEVLPVQKEINHNFQ-ATDYIQQQNNDHLQNKDSEGSEDHNQNINISTTP 291
E+ + L V V + N + T + N+ + + S + +Q + +S
Sbjct: 190 ESP-GTAIGRLPVRSVTSLADSNMEDYTRAVMNYINNSENTQQASVSPEESQLVMLSRFV 248
Query: 290 ETVTEKPGFWKSVGSKLSNAKDKVYSWFSSS 198
+V W SV S+A F SS
Sbjct: 249 FSVASG---WVSVLMNSSSAHQSNNLEFPSS 276
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 317 DYGLLNPHCPCSEDGHYFVVECNQWLENC 403
+Y L+NP D + F ++ WL+NC
Sbjct: 50 NYNLINPEDVTDSDNNEFALKDLTWLQNC 78
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -2
Query: 401 NFQATDYIQQQNNDHLQNKDSEGSEDHNQNINISTTPETVTEKPGFWKSVGSK 243
+FQ YI ++ LQ KD++ S+D ++ S+ E S SK
Sbjct: 2 SFQNPSYINAKHRSFLQPKDTQDSQDLRNWVSHSSVDEETAYSSSTLSSSSSK 54
>SPAC1F7.08 |fio1||iron transport multicopper oxidase
Fio1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 622
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/52 (21%), Positives = 25/52 (48%)
Frame = -2
Query: 602 NNXHQEISSXDQQNTDSQLDIGHEETNVQSQDDGNQSPWKRIGNIENEHKVS 447
+N + +++ N+D+ D+G + + S DD +P E+ H ++
Sbjct: 291 DNYNPNVTAWLSYNSDASYDLGPDIDEIDSYDDAELNPLYSWDVTESNHSIN 342
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 359 HLQNK-DSEGSEDHNQNINISTTPETVTEKPGFWKSVGSKLSNAKDK 222
HL N SE + N TP++ + KPGF KS+ S +SN+ K
Sbjct: 394 HLANDISSEKQSIKSANEKAYVTPKSNSLKPGFGKSL-SDISNSATK 439
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 26.6 bits (56), Expect = 3.2
Identities = 18/91 (19%), Positives = 34/91 (37%)
Frame = -2
Query: 635 FEQLEDFGQQNNNXHQEISSXDQQNTDSQLDIGHEETNVQSQDDGNQSPWKRIGNIENEH 456
F Q+ F Q N D N H+ +V+ + S K +
Sbjct: 5 FSQIPRFKQVNQYIRMSTRQSDISNFFIS-SASHKSEHVEVSQSSSDS--KNVDGRSTSE 61
Query: 455 KVSTSNLEVLPVQKEINHNFQATDYIQQQNN 363
K +++++ K NH+ T ++++NN
Sbjct: 62 KRKVESVKLVDESKHNNHDDTGTQNVERENN 92
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = -2
Query: 371 QNNDHLQNKDSEGSEDHNQNINISTTPETVTEKPGFWKSVGSK 243
+NN H + + + SE H+ +N + E + G + G++
Sbjct: 7 ENNSHASSNERQSSEGHDDYLNRNPNSEATEGEEGTHPTTGTQ 49
>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 405
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = -2
Query: 416 KEINHNFQATDYIQQQNNDHLQNKDSEGSEDHNQNINISTTPETVTE 276
+E++ N DY+Q D+ N S E+HN + + + E
Sbjct: 319 EELDENLPYNDYLQYYGPDYKLNVLSNNMENHNTRQYLDSITSEIIE 365
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = -2
Query: 434 EVLPVQKEINHNFQATDYIQQQNNDHLQNKDSEGSEDHNQNINISTTPETVTEK 273
E++P KE+ + D + + + DSE DH+ ++ T TE+
Sbjct: 166 EIIPDIKEVLAEKRKKDELLKNRKGKKEISDSEPESDHDSCVSTDTVASCSTEQ 219
>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 607
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/66 (18%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = -2
Query: 461 EHKVSTSNLEVLPVQKEINHNFQATDYIQQQNNDHLQNKDSEGS---EDHNQNINISTTP 291
++ + + ++ LP+ I + + ++N+H ++ S GS E+ + N+++
Sbjct: 71 DNHMHSKHISKLPIASPIPRGLDRSGELSYKDNNHWSDRSSTGSPRWENGSMNLSVEEME 130
Query: 290 ETVTEK 273
+ V K
Sbjct: 131 KVVQPK 136
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +3
Query: 3 LVNFFNSLPDVSIKF--K*YSSASGG 74
L N++N +PDV K+ K YS +GG
Sbjct: 457 LTNYYNYIPDVPYKYAKKLYSILNGG 482
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/67 (22%), Positives = 29/67 (43%)
Frame = -2
Query: 482 RIGNIENEHKVSTSNLEVLPVQKEINHNFQATDYIQQQNNDHLQNKDSEGSEDHNQNINI 303
R+ N+ H +++ V + H+F + + + ND N E D +Q ++
Sbjct: 332 RLKNLSQRHTNHSTDHHDDTVDSHLLHSFVSAENANEPTNDVDDNSLQEQVADASQFVSF 391
Query: 302 STTPETV 282
T +TV
Sbjct: 392 LETTKTV 398
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.4 bits (53), Expect = 7.3
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = -2
Query: 566 QNTDSQLDIGHEETNVQSQDDGNQSPWKRIGNIENEHKVSTSN-LEVLPVQKEINHNFQA 390
+ TD + N + PW+ + + E + ++ LE+ PV++ H A
Sbjct: 551 RKTDESHSPNSKTDNSSTHKQELYGPWRLLRLLPRETRAVIAHMLELDPVKRYDIHRVFA 610
Query: 389 TDYIQQQNNDHLQNKDSEGSEDHNQNI 309
++I + H++N S H N+
Sbjct: 611 DNWINDISMCHMENGKVIHSPTHVHNL 637
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 459 FIFNISYSFPWRLVAIILRLYICFFMT 539
F+F +++SF + L I+ L C F++
Sbjct: 185 FMFGLNWSFDYALSIAIIALQTCMFIS 211
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 368 FVVECNQWLENCDLF-LFEQAKLLN*MLRLCVHFQYFL 478
F++ CNQ NCD+ L ++ K ++ L C FQ L
Sbjct: 1976 FLIRCNQSQFNCDILQLLKENKQMSSQLHEC--FQLLL 2011
>SPAC869.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 116
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = -2
Query: 563 NTDSQLDIGHEETNVQSQDDGNQSPWKRIGNIENEHKVSTSNLEV 429
+ D ++ E ++Q + N+S K +GN+ +K + N +V
Sbjct: 52 DADDAGELREEGFGTKNQFEDNESQAKNLGNVRGGYKAAMHNPKV 96
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -2
Query: 440 NLEVLPVQKEINHNFQ--ATDYIQQQNNDHLQNKDSEGSEDHNQ 315
N++V+ ++E +F+ A QQ++ D+L+ K SE + N+
Sbjct: 607 NIQVVKRRQEKEKSFRQKAKQLKQQEDEDNLKRKRSESDVEDNE 650
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 380 IQQQNNDHLQNKD-SEGSEDHNQNINISTTPETVTEKP 270
+Q ++ HL+N D EG ED + +I+ STT KP
Sbjct: 498 VQGESAAHLENVDGEEGIEDSSNDIS-STTSSDGRAKP 534
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.0 bits (52), Expect = 9.7
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = -2
Query: 533 EETNVQSQDDGNQSPWKRIGNIENEHKVSTSNLEVLPVQKEINH--NFQATDYIQQQNND 360
+E S DD + + + + + N E P+ +E++ +F++ + Q N D
Sbjct: 689 QELESNSSDDDVVEVHRELSHNSSSNDEDDGNDED-PLSREMSRRLSFESANDSDQDNRD 747
Query: 359 HLQNKDSEGSEDHNQN 312
H S+ D+N N
Sbjct: 748 HFAQYMSQQISDNNAN 763
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,736
Number of Sequences: 5004
Number of extensions: 47115
Number of successful extensions: 201
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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