Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12h24
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    36   5e-04
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    25   0.85 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   4.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.0  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
 Frame = -2

Query: 623 EDFGQQN-NNXHQEISSXDQQNTDSQLDIGHEETNVQSQDDGNQSPWKRIGNIENEHKVS 447
           ++ G QN +N + +  + + QN D+Q      + N   Q+D  Q+  K+ GN +N++K +
Sbjct: 425 QNAGNQNADNQNADNQNANNQNADNQ---NANKQNGNRQNDNRQNDNKQNGNRQNDNKQN 481

Query: 446 TSNLEVLPVQKEINHNFQATDYIQQQN--NDHLQNKDSEGSEDHNQNIN 306
            +            +  +  D  Q  N  ND+ +N + +    +NQN N
Sbjct: 482 GNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDN 530



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/40 (20%), Positives = 19/40 (47%)
 Frame = -2

Query: 611 QQNNNXHQEISSXDQQNTDSQLDIGHEETNVQSQDDGNQS 492
           +QN N   +      +  D++ +   +  N  +Q+D N++
Sbjct: 494 RQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRN 533


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 422 VQKEINHNFQATDYIQQQNNDHLQNKDSEGSEDHNQNIN 306
           V    N N Q T+  Q  NN     K++   +++NQN N
Sbjct: 415 VNNNQNDNIQNTNN-QNDNNQKNNKKNANNQKNNNQNDN 452



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 470 IENEHKVSTSNLEVLPVQ-KEINHNFQATDYIQQQNNDHLQNKDSEGSEDHNQNIN 306
           + ++      N  +L    KE+  N   T  +    ND++QN +++   D+NQ  N
Sbjct: 387 VNDDFNFDDVNFRILGANVKELIRN---THCVNNNQNDNIQNTNNQ--NDNNQKNN 437


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = -2

Query: 371 QNNDHLQNKDSEGSEDHNQNINISTTPETVTEKPGFWKSVGSKLSN 234
           Q  ++++ ++ E    +   + +     TVT++P   KS GS+ ++
Sbjct: 8   QAAEYIERREREAEHGYASTMPMPDDMRTVTKRPKTKKSQGSRTTH 53


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -2

Query: 407 NHNFQATDYIQQQNNDHLQNKDSEGSEDHNQ 315
           N++++  DY  Q N +  + K     ED+++
Sbjct: 113 NNDYEDNDYGNQDNRNDRRKKTFAAREDNDE 143


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -2

Query: 368 NNDHLQNKDSEGSEDHNQNINISTTPETVTEKPGFWKSVGSKLSNAKDKVYSWFS--SS* 195
           N D L   + + +EDH++N+ I   P   ++        G  LS  K+KV +  S  S  
Sbjct: 409 NKDILHEHNVDDNEDHDENMII---PPKKSDMSNMQSDDGGPLS-LKNKVETTHSGTSLF 464

Query: 194 EYNLSVCC 171
             NL + C
Sbjct: 465 RINLGIEC 472


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 504 IILRLYICFFMTNIQL*ICILLVXAT 581
           ++L LY+ F    ++L  C++L  +T
Sbjct: 136 LLLMLYLLFATLPLRLSFCVVLACST 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,992
Number of Sequences: 438
Number of extensions: 3290
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)