Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12h22
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   5.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.0  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.3  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 620 GSTKVSGQYDTLSEAALLYARLCTADVKK*SAVPR 516
           GST ++   DT+S    + AR    D +   AVP+
Sbjct: 97  GSTPLTFVNDTVSFTTTVSARFWLMDCRNIGAVPK 131


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 562 PGFAPLTSRNSQQYRALTVPELTQQ 488
           PG  P   + +QQ++ +    L+QQ
Sbjct: 219 PGMHPRQQQQAQQHQGVVTSPLSQQ 243


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 545 QRCKAGHKEVQPRKGYHIDR*LS*IRVKLPWKPQT 649
           Q  +  H E++  +  H+   L  ++V +P  P+T
Sbjct: 47  QGSRTTHNELEKNRRAHLRNCLEKLKVLVPLGPET 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,739
Number of Sequences: 438
Number of extensions: 4142
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)