Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12h20
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    31   0.012
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.8  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 30.7 bits (66), Expect = 0.012
 Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
 Frame = +1

Query: 235 RMVRKVRTDHRDHRDHKGPGIGKAHKARMDHTGKGIDTDRKARMDHKARMARTE-----D 399
           RM R  R D  D  D            RMD        D   RMD   RM R +     D
Sbjct: 443 RMDRMDRVDRMDTMDRTDKMSSMDRMDRMDRVDTMDTMDTMDRMDRMDRMDRMDRMDRMD 502

Query: 400 TVQGTDRTAHRDHMD 444
           T+  TD+ +  D MD
Sbjct: 503 TMDRTDKMSRIDRMD 517



 Score = 25.0 bits (52), Expect = 0.60
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = +1

Query: 316 RMDHTGKGIDTDRKARMDHKARMAR-----TEDTVQGTDRTAHRDHMD 444
           RMD        DR  RMD   R+ R     T DT+  TD+ +  D MD
Sbjct: 398 RMDTMDTMDRIDRMDRMDRIDRIDRMHTMDTMDTMDRTDKMSSMDRMD 445


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 98  HQRHGGCQG 72
           HQR GGC G
Sbjct: 399 HQRIGGCNG 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,317
Number of Sequences: 438
Number of extensions: 2258
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)