Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12h19
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 357 1e-99
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 190 1e-49
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 188 6e-49
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 117 2e-27
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 27 2.8
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 5.0
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 6.6
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 25 8.7
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 357 bits (877), Expect = 1e-99
Identities = 160/223 (71%), Positives = 191/223 (85%)
Frame = -1
Query: 748 NEALYDICFRTLKLTTPTYGDLNHLVCATMSGITTCLRFPGQLNADLRKLAVNMVPFPRL 569
NEAL I TLK+ +P+Y DLNHLV A M+G+TT RFPG+LN+DLRKLAVNMVPFPRL
Sbjct: 204 NEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRL 263
Query: 568 HFYTPGFAPLTSRGAQQYRALTVPELTLQMFDAKNMMVACDPRHGRYLTVATIFRGRMSM 389
HF+ GFAPL + G+ ++A++VPELT QMFDA NMMVA DPRHGRYLTVA +FRG++SM
Sbjct: 264 HFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSM 323
Query: 388 KEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQTIFKRVSE 209
KEVDEQ+ ++Q KNS YFVEWIP+N AVC +PP+ LKM++TFIGN+T+IQ IF+R+ +
Sbjct: 324 KEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGD 383
Query: 208 QFVAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQ 80
QF AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+SEYQQYQ
Sbjct: 384 QFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 190 bits (464), Expect = 1e-49
Identities = 88/229 (38%), Positives = 135/229 (58%), Gaps = 8/229 (3%)
Frame = -1
Query: 748 NEALYDICFRTLKLTTPTYGDLNHLVCATMSGITTCLRFPGQLNADLRKLAVNMVPFPRL 569
NE+ YDIC R L + P+Y +LN L+ +S IT LRF G LN DL + N+VP+PR+
Sbjct: 206 NESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRI 265
Query: 568 HFYTPGFAPLTSRGAQQYRALTVPELTLQMFDAKNMMVACDPRHGRYLTVATIFRGRMSM 389
HF +AP+ S + + +V E+T Q F+ N MV CDPR GRY+ ++RG +
Sbjct: 266 HFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIP 325
Query: 388 KEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLK--------MASTFIGNTTAIQ 233
++V + I+ K + FV+W P KI +CD PP+ ++ A + NTT+I
Sbjct: 326 RDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIA 385
Query: 232 TIFKRVSEQFVAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQ 86
+ R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 386 EAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 188 bits (459), Expect = 6e-49
Identities = 87/229 (37%), Positives = 135/229 (58%), Gaps = 8/229 (3%)
Frame = -1
Query: 748 NEALYDICFRTLKLTTPTYGDLNHLVCATMSGITTCLRFPGQLNADLRKLAVNMVPFPRL 569
NEA YDIC R L + PTY +LN L+ +S IT LRF G LN DL + N+VP+PR+
Sbjct: 210 NEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRI 269
Query: 568 HFYTPGFAPLTSRGAQQYRALTVPELTLQMFDAKNMMVACDPRHGRYLTVATIFRGRMSM 389
HF ++P+ S + + +V E+T Q F+ N MV CDPR GRY+ ++RG +
Sbjct: 270 HFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIP 329
Query: 388 KEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPR--------GLKMASTFIGNTTAIQ 233
++V + +I+++ + FV+W P KI +C PP+ + A + NTT+I
Sbjct: 330 RDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIA 389
Query: 232 TIFKRVSEQFVAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQ 86
+ R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 390 EAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 117 bits (281), Expect = 2e-27
Identities = 67/230 (29%), Positives = 120/230 (52%), Gaps = 10/230 (4%)
Frame = -1
Query: 748 NEALYDICFRTLKLTTPTYGDLNHLVCATMSGITTCLRFPGQLNADLRKLAVNMVPFPRL 569
N AL I L PT+ N LV MS TT LR+PG +N DL + +++P PR
Sbjct: 207 NAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRC 266
Query: 568 HFYTPGFAPLTSRGAQQYRAL---TVPELTLQMFDAKNMMVACDP-RHGRYLTVATIFRG 401
HF + P T++ ++ +A+ TV ++ ++ KN MV+ +P + ++++ I +G
Sbjct: 267 HFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQG 326
Query: 400 RMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP---RGLKMASTFIGNTTAIQT 230
+V + L I+ + F+ W P + ++A+ P +++ + N T+I +
Sbjct: 327 EADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIAS 386
Query: 229 IFKRVSEQFVAMFRRKAFLHWYTGEGMDEMEFTEAESNMN---DLISEYQ 89
+FKR +Q+ + +R AFL Y E + E + E +S+ + DLI+EY+
Sbjct: 387 LFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -2
Query: 369 WRIFRTKTARILSSGYPITARLPCVTYLRGVLKWLRPSL--VTRRPYRPYSRGCLSSSWL 196
+R+ K+ ++++ GYP R+P V L+ +L+ + V PY S S +W+
Sbjct: 208 FRLRSQKSDKVMNKGYPFGYRIPSVGQLQLILRQTNGLVIKVFLVPYNVSSMVDCSKTWI 267
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -1
Query: 256 IGNTTAIQTIFKRVSEQFVAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQ 80
+ N + T++K + E+F +F RK L WY G+ E + N+N SE + Q
Sbjct: 1703 LNNPHLLFTLYKLL-ERFSLIFLRKCALLWYCRYGVS----FETQPNLNFQNSELSRLQ 1756
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 122 LCLRELHFIHTLTSVPVQEGFPPKHSHEL--LRHPLEYGLYGRRVTNEGRSHFKTPRR 289
+CL +L I+TL ++ +QE F L L++P + VTN +F + ++
Sbjct: 2892 VCLNQLTKIYTLPNIEIQEAFYKLREQVLCYLQNPRDLKTGLEVVTNTNLMYFNSRQK 2949
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 685 LNHLVCATMSGITTCLRFPGQLN 617
L HLV A + G++ C +PG+ N
Sbjct: 331 LTHLVDAPLLGMSVCPLYPGEEN 353
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,845
Number of Sequences: 5004
Number of extensions: 63163
Number of successful extensions: 198
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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