Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12h16
         (251 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   1.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   4.2  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    19   9.6  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    19   9.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   9.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   9.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   9.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 112 PHQPKEPNPQI 80
           PH P+ P PQ+
Sbjct: 467 PHPPETPGPQV 477


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 169 SVKAICNIIIMKQLCF*IAPHQPKEP 92
           SV  IC+I+ M  L + + PH    P
Sbjct: 288 SVNLICHILCMSDLHWQL-PHNSTNP 312


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 114 PLINLKNPILKFNRPTG 64
           P IN K+P+L    P G
Sbjct: 51  PRINSKSPLLSCACPDG 67


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 114 PLINLKNPILKFNRPTG 64
           P IN K+P+L    P G
Sbjct: 51  PRINSKSPLLSCACPDG 67


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 164 NTFTPLYNFY 193
           N F PLYN +
Sbjct: 377 NAFLPLYNLH 386


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/10 (60%), Positives = 6/10 (60%)
 Frame = +1

Query: 49  WSGPITCWTV 78
           WS  I CW V
Sbjct: 822 WSMGIVCWEV 831


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 107  MRGYLKTQLLHYNYI 151
            M+G  K++L HY+ +
Sbjct: 1025 MKGEEKSRLFHYSVV 1039


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,927
Number of Sequences: 438
Number of extensions: 1190
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4527252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)