Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12h10
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    29   0.73 
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    27   3.9  
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    26   5.2  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    26   5.2  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    26   6.8  

>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
 Frame = -1

Query: 396 KGVWENDRLGANDEVIIHFSDDARYEGQLKDWSFWGP------GKYYYPDGSVVRCDFND 235
           K  ++N R       +     +AR   QLK + F  P      GK YYP G +    FND
Sbjct: 132 KNFYQNHRRYTVSADMFQLLGEARTVAQLKSYGFCKPLEANEEGKPYYPCGIIANSLFND 191

Query: 234 N 232
           +
Sbjct: 192 S 192


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 108 PVFSPTSHKNDSLARTIH 161
           P+FSPT  KN S+  T H
Sbjct: 452 PLFSPTEEKNQSITSTHH 469


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +3

Query: 66  RNPLSSLERAYETRPVFSPTSHKNDSLARTI-HSLAPLSQARHVR--LDHL-IPYSQLDS 233
           R P+S LE+    RP+ +    KND  A ++ H    + + R  +  + HL   YS +DS
Sbjct: 79  RPPISELEKEKLERPLSNKKKEKNDHKAESLKHDYDSVGEKRISKDSVKHLDKTYSSIDS 138


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +3

Query: 711 KFYFLDCYYINTF 749
           KF+FL+C+Y+N +
Sbjct: 140 KFFFLECFYLNLY 152


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
 Frame = +3

Query: 75  LSSLERAYETRPVFSPTSHKNDSLARTI---HSLAPLSQARHVRLDHLIPYSQLDSCR*N 245
           +SS E  Y   P       + DSL RT    H+    +  R     + +  +  DS R N
Sbjct: 228 MSSFEDQYGRLP--PGWERRADSLGRTYYVDHNTRTTTWTRPASSTNPVHNTSSDSQRLN 285

Query: 246 HNEQHFHPDSN 278
           H  +H   DSN
Sbjct: 286 HQNRHLPDDSN 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,275,528
Number of Sequences: 5004
Number of extensions: 73636
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)