Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12h08
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    30   0.20 
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    27   1.4  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   1.9  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    27   2.5  
SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    27   2.5  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   4.3  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    25   5.7  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    25   7.5  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   10.0 

>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 17/73 (23%), Positives = 36/73 (49%)
 Frame = -2

Query: 296 TNVNAAGATNYALALHRFGVMVQTCVKEMDPFDAVLVMRLHTKKKEIMVVPDPSFNIIVL 117
           TNVN +   +  L+    G  V+      DP+  + V+ L+T++ E ++    S+ I  L
Sbjct: 99  TNVNLSALADLILSQPLLGSTVKVDGNNSDPYAMLSVINLNTRRDEPVIKQLTSYIISRL 158

Query: 116 QQARQKIKKNSEK 78
            ++  +++   +K
Sbjct: 159 AKSNSRLENELQK 171


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 219 DASLYHNTESVQSQGVVRGTGCIHICHYRTSVFIRHDNALNRFVFHYSVY 368
           D+S  H+++SV    V + + C   CH   S F  H    +     +SVY
Sbjct: 214 DSSARHSSDSVHEYLVKKPSNCDCECHAHFSSFPTHSGTPDDIEHIHSVY 263


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 416 EWLVNLSAKINNINPVIDRI 357
           EW  + SA +N I+PV+D++
Sbjct: 852 EWSAHYSALVNRISPVLDKL 871


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 195 CVERIHFLDASLYHNTESVQSQGVVRGTGCIHICHYRTSVFIRHDNALNRF 347
           C   IH+LDA   +NT  V++   V+   CIH       V  +H +  ++F
Sbjct: 340 CKGVIHYLDAHFVNNTGEVET---VKNAICIH--EEDDGVLFKHSDFRDKF 385


>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 20/77 (25%), Positives = 36/77 (46%)
 Frame = +3

Query: 132 EGRIRDHHDFFLFRMQTHY*YCVERIHFLDASLYHNTESVQSQGVVRGTGCIHICHYRTS 311
           +GRIRD H + L  +++H    ++R  F +A    N   +   GV +  G  H   ++  
Sbjct: 278 QGRIRDRHFWLLHGLKSHGSLEIDRGAF-EAITRTNRAGLLPVGVTKVHG--HFSAHQAV 334

Query: 312 VFIRHDNALNRFVFHYS 362
             I +   + R + +YS
Sbjct: 335 TVIYNGEEIGRALVNYS 351


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 149 VPDPSFNIIVLQQARQKIKKNSEKQFIS 66
           V DP FNIIV  +  Q +  N+ K+ I+
Sbjct: 405 VVDPEFNIIVSDRWLQPLGTNNSKEVIT 432


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = -2

Query: 446 VRAMLHEDGDEWLVNLSAKINNINPVIDRIMEDESVEGVIMTNKDGCPIMTNVNAAGATN 267
           +R  + E   E LV L+  I++   V++ + + +  E +++  + G P +     A  TN
Sbjct: 600 LRTAVEEREKEQLVTLTY-IDDEGDVVELVSDSDLREAILLARRRGLPRLEVRGVAAFTN 658

Query: 266 YALALH 249
           +  + H
Sbjct: 659 HLESSH 664


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 88  FFLIFCLACCNTIMLK 135
           FF I+ L CCN + LK
Sbjct: 288 FFTIYELCCCNKLFLK 303


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 201 RRSTSNAFAYEKERNHGGPGSVL--QHNRVTASET 103
           R  T+N   YEK   H G   VL   H+R   ++T
Sbjct: 739 RMQTTNEACYEKVMQHAGKNQVLIFVHSRKETAKT 773


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,240
Number of Sequences: 5004
Number of extensions: 44895
Number of successful extensions: 106
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)