Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12h07
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 28 1.8
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 27 3.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.1
SPCC757.10 |vph2||endoplasmic reticulum membrane involved in ass... 27 4.1
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 5.4
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 7.2
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 25 9.5
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 25 9.5
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.9 bits (59), Expect = 1.8
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Frame = +3
Query: 288 SATLDSAQERT*RQSNSEPLAPTQSNTVRVT-TNSALAHPIADVRILAWPLPGTEFNAKY 464
S L SA+E S ++ + + TV V T+S P A P+P + +A
Sbjct: 87 SVVLYSAKETVTVSSYWSLVSTSVTGTVYVPYTSSVACFPYA-TSDAPNPIPRGD-SATS 144
Query: 465 MPSRSAKSTVDFSISKITLYSPSTGLLSESGKNVANSSILQS*VKIYNPPAYTHLENE 638
S D S + IT SPST ++ + + SS L I +P ++ +NE
Sbjct: 145 TSIAPTYSASDSSATTITSSSPSTSIIGTGSTDTSVSSTLTYHTPIASPTTSSNSDNE 202
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 27.1 bits (57), Expect = 3.1
Identities = 27/144 (18%), Positives = 57/144 (39%), Gaps = 5/144 (3%)
Frame = -1
Query: 466 IYFALNSVPGKGHAKILTSAIGWASAELVVTRTVLLWVGARGSEFD-----WRYVRSCAE 302
I+F L S+P K AK+ + + L ++ V+L + ++ F+ W ++ + +
Sbjct: 197 IHFILASMPTKYIAKLNSVGTYLNTLFLFISMIVILAMSSKNHGFNETSKVWSHIENYTD 256
Query: 301 SNVALIQHAATATLVWLWTRSDLPKKHSPIVVSLLALTPYRALIEEAIGSIFHLCAWALV 122
+ ++W + D P S + P ++ AIG I ++
Sbjct: 257 WPDGFAILMSFCGVIWTMSGYDAPFHMSEETANASVNAPRGIILTAAIGGIMGWVMQIVI 316
Query: 121 AVRAIHASAVGLSALATYAILAQQ 50
A + +AV + + +A Q
Sbjct: 317 AYTVVDQTAVVTGSDSMWATYLSQ 340
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 4.1
Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Frame = +3
Query: 207 TTIGECFLGKSLLVHSQTRVAVAACCISATLDSAQERT*RQSNS--EPLAPTQSNTVRVT 380
+T E + S L S + +S++ S+Q S+S APT +++ ++
Sbjct: 152 STSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLS 211
Query: 381 TNSALAHPIADVRILAWPLPGTEFNAKYMPSRSAKSTVDFSISKITLYSPSTGLLSESGK 560
++S ++ + + L + + +PS S+ S+ S S + S ST S S
Sbjct: 212 SSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSS-STSSSLSSSSSSSTASSSSSSS 270
Query: 561 NVANSS 578
++ +SS
Sbjct: 271 SIISSS 276
>SPCC757.10 |vph2||endoplasmic reticulum membrane involved in
assembly of the V-ATPase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 186
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -3
Query: 293 GTDTARCHCYSSLAVDKK*LAQKAFSYCCQLVS 195
GT TA +C SSL+++KK +A AFS LV+
Sbjct: 98 GTVTAVWYCTSSLSIEKK-IALCAFSAILVLVA 129
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 93 TAEAWIARTATNAHAHKWNILPIASSISAL*GVRANKLTTIGECFLGKSLL 245
T +A + T++ A W++ P+ SSI L A+K T+ E G SLL
Sbjct: 509 TPDAKQLSSLTSSDAEFWSVTPLKSSI--LRNGDASKQVTLSESPKGDSLL 557
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 25.8 bits (54), Expect = 7.2
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Frame = +3
Query: 192 RANKLTTIGECFLGKSLLVHSQTRVAVAACCISATLDSAQERT*RQ------SNSEPLAP 353
+ NKL TI + LG S L H Q + I+ + R Q SN+ PL P
Sbjct: 413 KLNKLPTIDKQILGTSSLTHFQDKTTAIEHSINKSNSKQPPRFKFQLPPRPTSNTLPLEP 472
Query: 354 TQSNTVRVTTNS 389
+ R + +S
Sbjct: 473 EEELVTRYSVSS 484
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -1
Query: 532 EGEYNVILEILKSTVDFADLLGIYFAL 452
EG++ ++L ILK + D+ + F+L
Sbjct: 37 EGKFKLVLSILKQCIGVKDIASLRFSL 63
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -3
Query: 755 VSRHLNKVQNDPISLRELLSLNICTLSYGLQIFWDLGICFV 633
+ R LN + + I+ R++ NI YG+ D G C V
Sbjct: 568 ILRGLNYIHSQGIAHRDIKPENILISEYGVLRITDFGACDV 608
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,344,026
Number of Sequences: 5004
Number of extensions: 72866
Number of successful extensions: 198
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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