Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12h07
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0080 - 31512792-31513046,31514087-31514202,31514797-315149...    81   8e-16
04_03_0894 - 20619037-20620392                                         28   7.5  
02_03_0226 - 16591383-16592030,16592132-16592211,16592246-165929...    28   9.9  

>03_06_0080 -
           31512792-31513046,31514087-31514202,31514797-31514911,
           31514997-31515056,31515619-31515688,31515952-31515986,
           31516094-31516231,31516369-31516737
          Length = 385

 Score = 81.4 bits (192), Expect = 8e-16
 Identities = 60/199 (30%), Positives = 93/199 (46%), Gaps = 8/199 (4%)
 Frame = -1

Query: 649 SEYASFSKCVYAGGLYIFTQLCKMLLLATFF--PDSDSSPVEGEYNVILEILKSTVDFAD 476
           SEY +   CV A  +Y+ T L K++ LAT    P++DS      ++   E++K  + F D
Sbjct: 182 SEYDTIGTCVKAAVVYLGTALVKLVCLATLLKVPENDS------FDPYQELMKIFIGFID 235

Query: 475 LLGIYFALNSVPGKG---HAKILTSAIGWASAELVVTRTVLLWVGARGSEFDWRYVRSCA 305
           + G+YFAL  +  +    + K     +GWA A+ V+ R   LW+GARG EF W Y+    
Sbjct: 236 VAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWIGARGLEFTWEYIFQGL 295

Query: 304 ESNVALI--QHAATATLVWLWTRSDLPKKHS-PIVVSLLALTPYRALIEEAIGSIFHLCA 134
           E+N  L+  +    A     W R+ L   H    + ++L+L+      E A    F L  
Sbjct: 296 EANANLLLEEIIRVADSKGGWLRAVLLTGHGFHQLAAVLSLSETNVRNEFANCRRFTLLR 355

Query: 133 WALVAVRAIHASAVGLSAL 77
           W L+    I      L  +
Sbjct: 356 WLLLYFHRIRMRLFSLDTI 374


>04_03_0894 - 20619037-20620392
          Length = 451

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 211 VVSLLALTPYRALIEEAIGSIFHLCAWALVAVRAIHASAV 92
           VV ++A  P    ++ A+  +  LC WA   V+A+ A AV
Sbjct: 270 VVGVVADRPSAKAVKVALHVLCRLCPWARNRVKAVDAGAV 309


>02_03_0226 -
           16591383-16592030,16592132-16592211,16592246-16592971,
           16593060-16593192,16596839-16597518,16597604-16597666,
           16597740-16597916,16598414-16598542,16598638-16598796,
           16599057-16599224,16599418-16599519,16599812-16599857
          Length = 1036

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 310 CAESNVALIQHAATATLVWLWTRSDLPKKH 221
           C +  + L+Q+     L+ LWT SD   KH
Sbjct: 345 CRDGKINLVQNETPPELMRLWTSSDPDAKH 374


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,836,277
Number of Sequences: 37544
Number of extensions: 450540
Number of successful extensions: 1061
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)