Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12h07
         (799 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001118-1|AAH01118.1|  224|Homo sapiens transmembrane protein 1...   218   2e-56
Y18007-1|CAA77013.1|  224|Homo sapiens seven transmembrane domai...   201   3e-51
DQ644568-1|ABG29111.1|  203|Homo sapiens sigma-1 splice variant ...    33   1.6  
BC057784-1|AAH57784.1|  519|Homo sapiens FLJ14803 protein protein.     31   3.6  
BC045618-1|AAH45618.1|  561|Homo sapiens FLJ14803 protein protein.     31   3.6  
AK074732-1|BAC11168.1|  561|Homo sapiens protein ( Homo sapiens ...    31   3.6  
AK027709-1|BAB55314.1|  561|Homo sapiens protein ( Homo sapiens ...    31   3.6  
AK027678-1|BAB55289.1|  203|Homo sapiens protein ( Homo sapiens ...    31   3.6  

>BC001118-1|AAH01118.1|  224|Homo sapiens transmembrane protein 147
           protein.
          Length = 224

 Score =  218 bits (532), Expect = 2e-56
 Identities = 102/220 (46%), Positives = 144/220 (65%)
 Frame = -1

Query: 727 MTLYHFGNCLALIYAPYHMAYKYSGISEYASFSKCVYAGGLYIFTQLCKMLLLATFFPDS 548
           MTL+HFGNC AL Y PY + YK SG+SEY +F KCV AG  Y+F QLCKML LATFFP  
Sbjct: 1   MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTW 60

Query: 547 DSSPVEGEYNVILEILKSTVDFADLLGIYFALNSVPGKGHAKILTSAIGWASAELVVTRT 368
           +     G Y+ I E +K++VD ADL+G+   ++   GKG  KI+ +A+GWA+AEL+++R 
Sbjct: 61  EG----GIYDFIGEFMKASVDVADLIGLNLVMSRNAGKGEYKIMVAALGWATAELIMSRC 116

Query: 367 VLLWVGARGSEFDWRYVRSCAESNVALIQHAATATLVWLWTRSDLPKKHSPIVVSLLALT 188
           + LWVGARG EFDW+Y++   +SN++L+ +   +  VW+ TR DL     P V+ L+ L+
Sbjct: 117 IPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASAQVWMITRYDLYHTFRPAVLLLMFLS 176

Query: 187 PYRALIEEAIGSIFHLCAWALVAVRAIHASAVGLSALATY 68
            Y+A + E    +  L +WA +  RA+    + LS LA Y
Sbjct: 177 VYKAFVMETFVHLCSLGSWAALLARAVVTGLLALSTLALY 216


>Y18007-1|CAA77013.1|  224|Homo sapiens seven transmembrane domain
           protein protein.
          Length = 224

 Score =  201 bits (490), Expect = 3e-51
 Identities = 96/220 (43%), Positives = 139/220 (63%)
 Frame = -1

Query: 727 MTLYHFGNCLALIYAPYHMAYKYSGISEYASFSKCVYAGGLYIFTQLCKMLLLATFFPDS 548
           MTL+HFGNC AL Y PY + YK + +SEY +F KCV AG  Y+F QLCKML LATFFP  
Sbjct: 1   MTLFHFGNCFALAYFPYFITYKCTDLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTW 60

Query: 547 DSSPVEGEYNVILEILKSTVDFADLLGIYFALNSVPGKGHAKILTSAIGWASAELVVTRT 368
           +     G Y+ I E +K++VD ADL+G+   ++   GKG  KI+ +A+GWA+AEL+++R 
Sbjct: 61  EG----GIYDFIGEFMKASVDVADLIGLNLVMSRNAGKGEYKIMVAALGWATAELIMSRC 116

Query: 367 VLLWVGARGSEFDWRYVRSCAESNVALIQHAATATLVWLWTRSDLPKKHSPIVVSLLALT 188
           + LWVGARG EFDW+Y++   +SN++L  +   +  VW+ TR DL     P V+ L+ L 
Sbjct: 117 IPLWVGARGIEFDWKYIQMSIDSNISLGPYIVASAQVWMITRYDLYHTFRPAVLLLMFLR 176

Query: 187 PYRALIEEAIGSIFHLCAWALVAVRAIHASAVGLSALATY 68
            Y+A + E    +  L +WA++    +    + +  LA Y
Sbjct: 177 VYKAFVMETFVHLCSLGSWAVLMAGVVVKGLLVIRNLAMY 216


>DQ644568-1|ABG29111.1|  203|Homo sapiens sigma-1 splice variant
           protein.
          Length = 203

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = -1

Query: 328 WRYVRSCAESNVALIQHAATATLVWLWTRSDLPKKHSPIVVSLLALTPYRALIEEAIGSI 149
           W   R  A + + L   A    +VWLW   D     S ++V L  L P   L +E +  +
Sbjct: 3   WAVGRRWAWAALLLAVAAVLTQVVWLWLGLDHELAFSRLIVELRRLHPGHVLPDEELQWV 62

Query: 148 FHLCAWALVAVRAIHAS 98
           F      + A+  +HAS
Sbjct: 63  FVNAGGWMGAMCLLHAS 79


>BC057784-1|AAH57784.1|  519|Homo sapiens FLJ14803 protein protein.
          Length = 519

 Score = 31.5 bits (68), Expect = 3.6
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 462 YMPSRSAKSTVDFSISKITLYSPSTGLLSESGKNVANSSILQS*VKIYN 608
           Y PSRS  ++  F+ S +T YSP    LS  G    +  +  S V  YN
Sbjct: 142 YSPSRSPSTSPKFTTSCMTGYSPQLQGLSSGGSGSYSPGVTYSPVSGYN 190


>BC045618-1|AAH45618.1|  561|Homo sapiens FLJ14803 protein protein.
          Length = 561

 Score = 31.5 bits (68), Expect = 3.6
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 462 YMPSRSAKSTVDFSISKITLYSPSTGLLSESGKNVANSSILQS*VKIYN 608
           Y PSRS  ++  F+ S +T YSP    LS  G    +  +  S V  YN
Sbjct: 142 YSPSRSPSTSPKFTTSCMTGYSPQLQGLSSGGSGSYSPGVTYSPVSGYN 190


>AK074732-1|BAC11168.1|  561|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90251 fis, clone NT2RM4000115. ).
          Length = 561

 Score = 31.5 bits (68), Expect = 3.6
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 462 YMPSRSAKSTVDFSISKITLYSPSTGLLSESGKNVANSSILQS*VKIYN 608
           Y PSRS  ++  F+ S +T YSP    LS  G    +  +  S V  YN
Sbjct: 142 YSPSRSPSTSPKFTTSCMTGYSPQLQGLSSGGSGSYSPGVTYSPVSGYN 190


>AK027709-1|BAB55314.1|  561|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14803 fis, clone NT2RP4001442. ).
          Length = 561

 Score = 31.5 bits (68), Expect = 3.6
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 462 YMPSRSAKSTVDFSISKITLYSPSTGLLSESGKNVANSSILQS*VKIYN 608
           Y PSRS  ++  F+ S +T YSP    LS  G    +  +  S V  YN
Sbjct: 142 YSPSRSPSTSPKFTTSCMTGYSPQLQGLSSGGSGSYSPGVTYSPVSGYN 190


>AK027678-1|BAB55289.1|  203|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14772 fis, clone NT2RP3004332. ).
          Length = 203

 Score = 31.5 bits (68), Expect = 3.6
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 462 YMPSRSAKSTVDFSISKITLYSPSTGLLSESGKNVANSSILQS*VKIYN 608
           Y PSRS  ++  F+ S +T YSP    LS  G    +  +  S V  YN
Sbjct: 142 YSPSRSPSTSPKFTTSCMTGYSPQLQGLSSGGSGSYSPGVTYSPVSGYN 190


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,686,339
Number of Sequences: 237096
Number of extensions: 2685319
Number of successful extensions: 9361
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9359
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)