Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12h05
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    34   0.020
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    30   0.33 
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    27   1.8  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   5.3  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   5.3  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    25   7.1  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    25   7.1  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   9.3  

>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = -3

Query: 524 LVVVRPECAGILRDLPMDEPKLSPASHSVSPYFME-NDDPDKFIKKGFSGHVPYGFQRFG 348
           LV   P       + P ++  +S    S+ PYF   NDD   F+KKGF     Y     G
Sbjct: 213 LVAGTPATDDFSHNKPNNQISISTFYSSLDPYFRAFNDDDIAFLKKGFDVSSSYNIPPLG 272

Query: 347 ESSKKLT 327
           E    LT
Sbjct: 273 ERYYDLT 279


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = -1

Query: 292 EEGRALSGLL*MWSNLILHYP*IPLRSTISTSVCCPTTQVTCQAASSDSEKPTATTRETL 113
           +EGRAL+     + N  + Y  IP+R   S S  C       QA     +  T+T++  L
Sbjct: 333 QEGRALNVSDCNFGNEEIAYGGIPMRVCHSDSTLCDARIAAKQALKGKRQYDTSTSKAEL 392

Query: 112 SVGSEETSHL 83
           S    +  H+
Sbjct: 393 STPPSKRRHI 402


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -3

Query: 566 LVDRFSATAEFKLPLVVVRPECAGILRDLPMDEPKLSPASHSVSPYFMEND 414
           L  +F+ +A ++  +V  +PE    +++     PK+  A  S++P   E+D
Sbjct: 350 LTQQFALSAPYESCIVTKKPEPCITVKEEEQLAPKIESADLSITPQVTEHD 400


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 323 SALCDFSSNYRRRQST---EWAPVNVVKPDPPLSINPTEIYHKHVGMLPNYAG 174
           +A+ + SS+ RRRQST   + APV++ K      +N    + ++  +  +  G
Sbjct: 591 NAMAELSSSMRRRQSTSVDDEAPVSLSKTSSSTRLNGLGYHSRNTSIASDIDG 643


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 70  IPFF*DVKSPRSQRLAS-LVSLP*VFPNLKTQPGT*PA*LGN 192
           I  F  V S  ++RLA+ L S+P  +PN    PGT P  L N
Sbjct: 323 IELFVAVHSGFTERLANRLYSMPHEYPNFSLAPGT-PESLSN 363


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 84  RCEVSSEPTLSVSRVVAVGFSESEDAAWHVTCVVGQH 194
           RCE++    ++ S      F  SE+++WH + V+  H
Sbjct: 476 RCEMTDSIIIASSNETIKFFDLSEESSWHNSRVLTWH 512


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 601 SVFRPEKDSPGIWLTDSLLRRSL 533
           +VFRPE   P IW+   L R  L
Sbjct: 36  NVFRPENGRPPIWVQRRLKRSDL 58


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 573 GLSFSGLKTDDPLQLVP 623
           GLS   LK DDP+Q+ P
Sbjct: 280 GLSNDELKKDDPIQITP 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,144
Number of Sequences: 5004
Number of extensions: 57966
Number of successful extensions: 182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)