Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12h05
(646 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC132918-1|AAI32919.1| 317|Homo sapiens similar to 4931415M17 p... 33 0.87
BC132916-1|AAI32917.1| 317|Homo sapiens similar to 4931415M17 p... 33 0.87
M19720-1|AAA59879.1| 364|Homo sapiens L-myc protein protein. 33 1.1
AL033527-8|CAI19407.1| 394|Homo sapiens v-myc myelocytomatosis ... 33 1.1
AL033527-7|CAB75682.1| 364|Homo sapiens v-myc myelocytomatosis ... 33 1.1
X82835-1|CAA58042.1| 1977|Homo sapiens sodium channel alpha subu... 31 2.7
DQ857292-1|ABI51981.1| 1977|Homo sapiens voltage-gated sodium ch... 31 2.7
BC031558-1|AAH31558.1| 297|Homo sapiens chromosome 1 open readi... 31 2.7
AL137199-1|CAB69909.1| 282|Homo sapiens hypothetical protein pr... 31 2.7
AL137198-1|CAB69908.1| 297|Homo sapiens hypothetical protein pr... 31 2.7
AL049557-6|CAI22713.1| 297|Homo sapiens novel protein protein. 31 2.7
M94055-1|AAA18895.1| 2005|Homo sapiens voltage-gated sodium chan... 31 4.6
AF327246-2|AAG53413.1| 2005|Homo sapiens voltage-gated sodium ch... 31 4.6
AF327246-1|AAG53412.1| 2005|Homo sapiens voltage-gated sodium ch... 31 4.6
AC011303-1|AAY14971.1| 2005|Homo sapiens unknown protein. 31 4.6
BC058014-1|AAH58014.1| 332|Homo sapiens C12orf29 protein protein. 30 8.1
BC035136-1|AAH35136.2| 323|Homo sapiens C12orf29 protein protein. 30 8.1
AY043484-1|AAK95360.1| 1998|Homo sapiens voltage-gated sodium ch... 30 8.1
AF225985-1|AAK00217.1| 1999|Homo sapiens voltage-gated sodium ch... 30 8.1
AC010127-1|AAX81984.1| 1998|Homo sapiens unknown protein. 30 8.1
AB098335-1|BAC45228.1| 1981|Homo sapiens Voltage-gated sodium ch... 30 8.1
AB093549-1|BAC21102.1| 1998|Homo sapiens Voltage-gated sodium ch... 30 8.1
AB093548-1|BAC21101.1| 2009|Homo sapiens voltage-gated sodium ch... 30 8.1
>BC132918-1|AAI32919.1| 317|Homo sapiens similar to 4931415M17
protein protein.
Length = 317
Score = 33.1 bits (72), Expect = 0.87
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 224 PTEIYHKHVGMLPNYAGHVPGCVFRFGKTYGNDTRDA--KRWLRGDFT 87
P+ + G++P Y G +P + T+GN TR A K W + + T
Sbjct: 269 PSNHIYSSQGLIPFYMGFIPAMQDNYALTFGNSTRRAYWKEWAKRNHT 316
>BC132916-1|AAI32917.1| 317|Homo sapiens similar to 4931415M17
protein protein.
Length = 317
Score = 33.1 bits (72), Expect = 0.87
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 224 PTEIYHKHVGMLPNYAGHVPGCVFRFGKTYGNDTRDA--KRWLRGDFT 87
P+ + G++P Y G +P + T+GN TR A K W + + T
Sbjct: 269 PSNHIYSSQGLIPFYMGFIPAMQDNYALTFGNSTRRAYWKEWAKRNHT 316
>M19720-1|AAA59879.1| 364|Homo sapiens L-myc protein protein.
Length = 364
Score = 32.7 bits (71), Expect = 1.1
Identities = 25/75 (33%), Positives = 33/75 (44%)
Frame = -3
Query: 629 AARNQLERVVSLQAGKGQPWDLVDRFSATAEFKLPLVVVRPECAGILRDLPMDEPKLSPA 450
+AR +LER VS + G P + SA + L P A P+ EPK
Sbjct: 100 SARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAA---PCPLGEPKTQAC 156
Query: 449 SHSVSPYFMENDDPD 405
S S SP EN++ D
Sbjct: 157 SGSESPSDSENEEID 171
>AL033527-8|CAI19407.1| 394|Homo sapiens v-myc myelocytomatosis
viral oncogene homolog 1, lung carcinoma derived (avian)
protein.
Length = 394
Score = 32.7 bits (71), Expect = 1.1
Identities = 25/75 (33%), Positives = 33/75 (44%)
Frame = -3
Query: 629 AARNQLERVVSLQAGKGQPWDLVDRFSATAEFKLPLVVVRPECAGILRDLPMDEPKLSPA 450
+AR +LER VS + G P + SA + L P A P+ EPK
Sbjct: 130 SARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAA---PCPLGEPKTQAC 186
Query: 449 SHSVSPYFMENDDPD 405
S S SP EN++ D
Sbjct: 187 SGSESPSDSENEEID 201
>AL033527-7|CAB75682.1| 364|Homo sapiens v-myc myelocytomatosis
viral oncogene homolog 1, lung carcinoma derived (avian)
protein.
Length = 364
Score = 32.7 bits (71), Expect = 1.1
Identities = 25/75 (33%), Positives = 33/75 (44%)
Frame = -3
Query: 629 AARNQLERVVSLQAGKGQPWDLVDRFSATAEFKLPLVVVRPECAGILRDLPMDEPKLSPA 450
+AR +LER VS + G P + SA + L P A P+ EPK
Sbjct: 100 SARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAA---PCPLGEPKTQAC 156
Query: 449 SHSVSPYFMENDDPD 405
S S SP EN++ D
Sbjct: 157 SGSESPSDSENEEID 171
>X82835-1|CAA58042.1| 1977|Homo sapiens sodium channel alpha subunit
protein.
Length = 1977
Score = 31.5 bits (68), Expect = 2.7
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Frame = +3
Query: 330 ELFRRLAETLKAVRHMTRKPFLYEFV------WIIIFHKVRTDGMRCWRQFRLVHW*ITK 491
+++ +T+K + K F Y F+ WI +K CW F +V +
Sbjct: 1202 DIYIERKKTIKIILEYADKIFTYIFILEMLLKWIAYGYKTYFTNAWCWLDFLIVDVSLVT 1261
Query: 492 YTRTFRSYYDQGQLKLRRSRESVNQIPGLS-FSGLK 596
Y D G +K R+ ++ + LS F G++
Sbjct: 1262 LVANTLGYSDLGPIKSLRTLRALRPLRALSRFEGMR 1297
>DQ857292-1|ABI51981.1| 1977|Homo sapiens voltage-gated sodium channel
Nav1.7 protein.
Length = 1977
Score = 31.5 bits (68), Expect = 2.7
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Frame = +3
Query: 330 ELFRRLAETLKAVRHMTRKPFLYEFV------WIIIFHKVRTDGMRCWRQFRLVHW*ITK 491
+++ +T+K + K F Y F+ WI +K CW F +V +
Sbjct: 1202 DIYIERKKTIKIILEYADKIFTYIFILEMLLKWIAYGYKTYFTNAWCWLDFLIVDVSLVT 1261
Query: 492 YTRTFRSYYDQGQLKLRRSRESVNQIPGLS-FSGLK 596
Y D G +K R+ ++ + LS F G++
Sbjct: 1262 LVANTLGYSDLGPIKSLRTLRALRPLRALSRFEGMR 1297
>BC031558-1|AAH31558.1| 297|Homo sapiens chromosome 1 open reading
frame 183 protein.
Length = 297
Score = 31.5 bits (68), Expect = 2.7
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = -3
Query: 584 KGQPWDLVDRFSATAE-FKLPLVVVRPECAGILRDLPMDEPKLSPASHSVSPYFMENDDP 408
KGQP +L RF+ TA FK L VRP+ +L++ P + P S + ++
Sbjct: 194 KGQPQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPESRTGRSQKVKK--- 250
Query: 407 DKFIKKGFSGHVPY---GFQRFGES 342
+ + KG SGH P+ G R GE+
Sbjct: 251 -RSLSKG-SGHFPFPGTGEHRRGEN 273
>AL137199-1|CAB69909.1| 282|Homo sapiens hypothetical protein
protein.
Length = 282
Score = 31.5 bits (68), Expect = 2.7
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = -3
Query: 584 KGQPWDLVDRFSATAE-FKLPLVVVRPECAGILRDLPMDEPKLSPASHSVSPYFMENDDP 408
KGQP +L RF+ TA FK L VRP+ +L++ P + P S + ++
Sbjct: 179 KGQPQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPESRTGRSQKVKK--- 235
Query: 407 DKFIKKGFSGHVPY---GFQRFGES 342
+ + KG SGH P+ G R GE+
Sbjct: 236 -RSLSKG-SGHFPFPGTGEHRRGEN 258
>AL137198-1|CAB69908.1| 297|Homo sapiens hypothetical protein
protein.
Length = 297
Score = 31.5 bits (68), Expect = 2.7
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = -3
Query: 584 KGQPWDLVDRFSATAE-FKLPLVVVRPECAGILRDLPMDEPKLSPASHSVSPYFMENDDP 408
KGQP +L RF+ TA FK L VRP+ +L++ P + P S + ++
Sbjct: 194 KGQPQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPESRTGRSQKVKK--- 250
Query: 407 DKFIKKGFSGHVPY---GFQRFGES 342
+ + KG SGH P+ G R GE+
Sbjct: 251 -RSLSKG-SGHFPFPGTGEHRRGEN 273
>AL049557-6|CAI22713.1| 297|Homo sapiens novel protein protein.
Length = 297
Score = 31.5 bits (68), Expect = 2.7
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = -3
Query: 584 KGQPWDLVDRFSATAE-FKLPLVVVRPECAGILRDLPMDEPKLSPASHSVSPYFMENDDP 408
KGQP +L RF+ TA FK L VRP+ +L++ P + P S + ++
Sbjct: 194 KGQPQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPESRTGRSQKVKK--- 250
Query: 407 DKFIKKGFSGHVPY---GFQRFGES 342
+ + KG SGH P+ G R GE+
Sbjct: 251 -RSLSKG-SGHFPFPGTGEHRRGEN 273
>M94055-1|AAA18895.1| 2005|Homo sapiens voltage-gated sodium channel
protein.
Length = 2005
Score = 30.7 bits (66), Expect = 4.6
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Frame = +3
Query: 330 ELFRRLAETLKAVRHMTRKPFLYEFV------WIIIFHKVRTDGMRCWRQFRLVHW*ITK 491
+++ +T+K + K F Y F+ W+ +V CW F +V +
Sbjct: 1229 DIYIEQRKTIKTMLEYADKVFTYIFILEMLLKWVAYGFQVYFTNAWCWLDFLIVDVSLVS 1288
Query: 492 YTRTFRSYYDQGQLKLRRSRESVNQIPGLS-FSGLK 596
T Y + G +K R+ ++ + LS F G++
Sbjct: 1289 LTANALGYSELGAIKSLRTLRALRPLRALSRFEGMR 1324
>AF327246-2|AAG53413.1| 2005|Homo sapiens voltage-gated sodium channel
type II alpha subunit protein.
Length = 2005
Score = 30.7 bits (66), Expect = 4.6
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Frame = +3
Query: 330 ELFRRLAETLKAVRHMTRKPFLYEFV------WIIIFHKVRTDGMRCWRQFRLVHW*ITK 491
+++ +T+K + K F Y F+ W+ +V CW F +V +
Sbjct: 1229 DIYIEQRKTIKTMLEYADKVFTYIFILEMLLKWVAYGFQVYFTNAWCWLDFLIVDVSLVS 1288
Query: 492 YTRTFRSYYDQGQLKLRRSRESVNQIPGLS-FSGLK 596
T Y + G +K R+ ++ + LS F G++
Sbjct: 1289 LTANALGYSELGAIKSLRTLRALRPLRALSRFEGMR 1324
>AF327246-1|AAG53412.1| 2005|Homo sapiens voltage-gated sodium channel
type II alpha subunit protein.
Length = 2005
Score = 30.7 bits (66), Expect = 4.6
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Frame = +3
Query: 330 ELFRRLAETLKAVRHMTRKPFLYEFV------WIIIFHKVRTDGMRCWRQFRLVHW*ITK 491
+++ +T+K + K F Y F+ W+ +V CW F +V +
Sbjct: 1229 DIYIEQRKTIKTMLEYADKVFTYIFILEMLLKWVAYGFQVYFTNAWCWLDFLIVDVSLVS 1288
Query: 492 YTRTFRSYYDQGQLKLRRSRESVNQIPGLS-FSGLK 596
T Y + G +K R+ ++ + LS F G++
Sbjct: 1289 LTANALGYSELGAIKSLRTLRALRPLRALSRFEGMR 1324
>AC011303-1|AAY14971.1| 2005|Homo sapiens unknown protein.
Length = 2005
Score = 30.7 bits (66), Expect = 4.6
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Frame = +3
Query: 330 ELFRRLAETLKAVRHMTRKPFLYEFV------WIIIFHKVRTDGMRCWRQFRLVHW*ITK 491
+++ +T+K + K F Y F+ W+ +V CW F +V +
Sbjct: 1229 DIYIEQRKTIKTMLEYADKVFTYIFILEMLLKWVAYGFQVYFTNAWCWLDFLIVDVSLVS 1288
Query: 492 YTRTFRSYYDQGQLKLRRSRESVNQIPGLS-FSGLK 596
T Y + G +K R+ ++ + LS F G++
Sbjct: 1289 LTANALGYSELGAIKSLRTLRALRPLRALSRFEGMR 1324
>BC058014-1|AAH58014.1| 332|Homo sapiens C12orf29 protein protein.
Length = 332
Score = 29.9 bits (64), Expect = 8.1
Identities = 21/82 (25%), Positives = 31/82 (37%)
Frame = -3
Query: 401 FIKKGFSGHVPYGFQRFGESSKKLTNSALCDFSSNYRRRQSTEWAPVNVVKPDPPLSINP 222
F++KG S PY + R K +F + + W KP P I
Sbjct: 70 FLQKGASDQ-PYLWARLDRKPNKQAEKRFKNFLHSKENPKEFFWNVEEDFKPAPECWIPA 128
Query: 221 TEIYHKHVGMLPNYAGHVPGCV 156
E + +P+ GH+PG V
Sbjct: 129 KETEQINGNPVPDENGHIPGWV 150
>BC035136-1|AAH35136.2| 323|Homo sapiens C12orf29 protein protein.
Length = 323
Score = 29.9 bits (64), Expect = 8.1
Identities = 21/82 (25%), Positives = 31/82 (37%)
Frame = -3
Query: 401 FIKKGFSGHVPYGFQRFGESSKKLTNSALCDFSSNYRRRQSTEWAPVNVVKPDPPLSINP 222
F++KG S PY + R K +F + + W KP P I
Sbjct: 61 FLQKGASDQ-PYLWARLDRKPNKQAEKRFKNFLHSKENPKEFFWNVEEDFKPAPECWIPA 119
Query: 221 TEIYHKHVGMLPNYAGHVPGCV 156
E + +P+ GH+PG V
Sbjct: 120 KETEQINGNPVPDENGHIPGWV 141
>AY043484-1|AAK95360.1| 1998|Homo sapiens voltage-gated sodium channel
type I protein.
Length = 1998
Score = 29.9 bits (64), Expect = 8.1
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Frame = +3
Query: 351 ETLKAVRHMTRKPFLYEFV------WIIIFHKVRTDGMRCWRQFRLVHW*ITKYTRTFRS 512
+T+K + K F Y F+ W+ ++ CW F +V + T
Sbjct: 1235 KTIKTMLEYADKVFTYIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALG 1294
Query: 513 YYDQGQLKLRRSRESVNQIPGLS-FSGLK 596
Y + G +K R+ ++ + LS F G++
Sbjct: 1295 YSELGAIKSLRTLRALRPLRALSRFEGMR 1323
>AF225985-1|AAK00217.1| 1999|Homo sapiens voltage-gated sodium channel
alpha subunit SCN1A protein.
Length = 1999
Score = 29.9 bits (64), Expect = 8.1
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Frame = +3
Query: 351 ETLKAVRHMTRKPFLYEFV------WIIIFHKVRTDGMRCWRQFRLVHW*ITKYTRTFRS 512
+T+K + K F Y F+ W+ ++ CW F +V + T
Sbjct: 1236 KTIKTMLEYADKVFTYIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALG 1295
Query: 513 YYDQGQLKLRRSRESVNQIPGLS-FSGLK 596
Y + G +K R+ ++ + LS F G++
Sbjct: 1296 YSELGAIKSLRTLRALRPLRALSRFEGMR 1324
>AC010127-1|AAX81984.1| 1998|Homo sapiens unknown protein.
Length = 1998
Score = 29.9 bits (64), Expect = 8.1
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Frame = +3
Query: 351 ETLKAVRHMTRKPFLYEFV------WIIIFHKVRTDGMRCWRQFRLVHW*ITKYTRTFRS 512
+T+K + K F Y F+ W+ ++ CW F +V + T
Sbjct: 1235 KTIKTMLEYADKVFTYIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALG 1294
Query: 513 YYDQGQLKLRRSRESVNQIPGLS-FSGLK 596
Y + G +K R+ ++ + LS F G++
Sbjct: 1295 YSELGAIKSLRTLRALRPLRALSRFEGMR 1323
>AB098335-1|BAC45228.1| 1981|Homo sapiens Voltage-gated sodium channel
alpha 1 subunit protein.
Length = 1981
Score = 29.9 bits (64), Expect = 8.1
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Frame = +3
Query: 351 ETLKAVRHMTRKPFLYEFV------WIIIFHKVRTDGMRCWRQFRLVHW*ITKYTRTFRS 512
+T+K + K F Y F+ W+ ++ CW F +V + T
Sbjct: 1218 KTIKTMLEYADKVFTYIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALG 1277
Query: 513 YYDQGQLKLRRSRESVNQIPGLS-FSGLK 596
Y + G +K R+ ++ + LS F G++
Sbjct: 1278 YSELGAIKSLRTLRALRPLRALSRFEGMR 1306
>AB093549-1|BAC21102.1| 1998|Homo sapiens Voltage-gated sodium channel
alpha1 subunit protein.
Length = 1998
Score = 29.9 bits (64), Expect = 8.1
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Frame = +3
Query: 351 ETLKAVRHMTRKPFLYEFV------WIIIFHKVRTDGMRCWRQFRLVHW*ITKYTRTFRS 512
+T+K + K F Y F+ W+ ++ CW F +V + T
Sbjct: 1235 KTIKTMLEYADKVFTYIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALG 1294
Query: 513 YYDQGQLKLRRSRESVNQIPGLS-FSGLK 596
Y + G +K R+ ++ + LS F G++
Sbjct: 1295 YSELGAIKSLRTLRALRPLRALSRFEGMR 1323
>AB093548-1|BAC21101.1| 2009|Homo sapiens voltage-gated sodium channel
alpha1 subunit protein.
Length = 2009
Score = 29.9 bits (64), Expect = 8.1
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Frame = +3
Query: 351 ETLKAVRHMTRKPFLYEFV------WIIIFHKVRTDGMRCWRQFRLVHW*ITKYTRTFRS 512
+T+K + K F Y F+ W+ ++ CW F +V + T
Sbjct: 1246 KTIKTMLEYADKVFTYIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALG 1305
Query: 513 YYDQGQLKLRRSRESVNQIPGLS-FSGLK 596
Y + G +K R+ ++ + LS F G++
Sbjct: 1306 YSELGAIKSLRTLRALRPLRALSRFEGMR 1334
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,581,270
Number of Sequences: 237096
Number of extensions: 1986900
Number of successful extensions: 4684
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4680
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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