Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12h04
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...   136   3e-33
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    26   4.1  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    26   5.4  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    25   9.4  

>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score =  136 bits (328), Expect = 3e-33
 Identities = 66/170 (38%), Positives = 99/170 (58%), Gaps = 3/170 (1%)
 Frame = -3

Query: 643 ALAEXQVPINVCAVIPICENMVSGQCMKVGDVVRALNGLSIQIEDTDMEGRLMLADALVY 464
           AL +  +P+N   V P+ EN+ SG   K GDV+   NGLS++I++TD EGRL+LADA+ Y
Sbjct: 316 ALEQLSIPVNAVFVTPLTENLPSGSAAKPGDVIFMRNGLSVEIDNTDAEGRLILADAVHY 375

Query: 463 GQAVHKPELVIDVATFTRGVLQALGGAACGCYTESEALWRDVTAAGARSGDRAWRLPLWD 284
             + +K + VI+ +T T  +L ALG    G + + E LW+++  A   +GD  WR+P  +
Sbjct: 376 VSSQYKTKAVIEASTLTGAMLVALGNVFTGAFVQGEELWKNLETASHDAGDLFWRMPFHE 435

Query: 283 YYRRQITDDPSVDLRNKGSGKATSCLGAAFLKSFVC---CSWLHVDTTGV 143
            Y +Q+T   + DL N        C  AAF+K F+     S+ H+D  GV
Sbjct: 436 AYLKQLTSSSNADLCNVSRAGGGCCTAAAFIKCFLAQKDLSFAHLDIAGV 485


>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 529 LSIQIEDTDMEGRLMLADALVYGQAVHKPELV 434
           +S ++ +   EG L L  AL YGQ    PELV
Sbjct: 76  VSYELSNNANEGSLDLLGALQYGQCQGIPELV 107


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 614 CLRSHTDMREH--GERTVHEGRRRRQSSQRTLHPDRRHGHG 498
           CLR +  + ++   ++ +H+G R R S    L P +  GHG
Sbjct: 175 CLRGYCTVYKYYKWDKLIHDGIRARISQFVILPPFQHQGHG 215


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 620 YQCLRSHTDMREHGERTVHEGRRRRQ 543
           +Q  R+H++   H  +T H+G+R  Q
Sbjct: 152 HQRARTHSNANNHFTKTHHQGQRSHQ 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,818,700
Number of Sequences: 5004
Number of extensions: 29297
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)