Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12h01
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    26   0.48 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   4.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   7.8  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = -2

Query: 114 QIKTLQTVRNILNCVCVVYFIATLVFYTQTYVFM 13
           QI++ ++V  +L+ V +++FI    F+TQ  +++
Sbjct: 261 QIQSRKSVIKMLSAVVILFFICWAPFHTQRLLYV 294


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/31 (22%), Positives = 13/31 (41%)
 Frame = +1

Query: 661 RLLGTDWNSTFWTSSPLLRSQTRIVLSSLTL 753
           RLL  DW    W      ++   +   ++T+
Sbjct: 108 RLLEVDWLKNMWRPDSFFKNAKSVTFQTMTI 138


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 537 AGSEPGDLRVRRRRSKSL 484
           A    GDL +R+R SKSL
Sbjct: 369 ASKSHGDLELRQRSSKSL 386


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 727 RIVLSSLTLTIRELFRNTAC 786
           R+VLS+ +   REL ++T C
Sbjct: 47  RVVLSACSPYFRELLKSTPC 66


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 603 KRYVCTVCNSQYGS 644
           K Y CT+C+  +GS
Sbjct: 258 KVYKCTLCHETFGS 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,603
Number of Sequences: 438
Number of extensions: 4783
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)