Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12g18
         (173 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   0.59 
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              19   4.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          19   5.5  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    19   5.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               19   7.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    19   7.3  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       19   7.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    18   9.6  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    18   9.6  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 0.59
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 135 NHFNGIYSSKMYRYMKFTKLILS*KLRY 52
           NH+  +Y  K   YM    L+LS  +++
Sbjct: 109 NHYLWLYHDKTLLYMSKLTLVLSCAMKF 136


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 145 IWQESL*WYLFV 110
           IW  SL WYL +
Sbjct: 6   IWLVSLYWYLIL 17


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 30  KNQTESISNATSMTKLI**ISCTY 101
           KN+ E+  + TS+ ++   I C Y
Sbjct: 451 KNKVETTHSGTSLFRINLGIECGY 474


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -3

Query: 135 NHFNGIYSSKMYRYMKFT 82
           N+F  +Y + + R+ +FT
Sbjct: 20  NYFIFLYFNSLVRFRRFT 37


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 103 HFRRIDTIKVILAIL 147
           H + IDT++ +LAI+
Sbjct: 365 HSQLIDTLENVLAIV 379


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = -2

Query: 79  INFVIEVALLIDSVW 35
           +NF++ +  L+D  W
Sbjct: 280 LNFILHLFCLLDVQW 294


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -2

Query: 67  IEVALLIDSVWFFCL*PVY 11
           +++ ++I +V+F C  P Y
Sbjct: 259 LKMTVIIIAVFFICWTPYY 277


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 124 IKVILAILKNYEINKK 171
           IK+I   LK+ E+N K
Sbjct: 499 IKIITDQLKSEELNAK 514


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = +2

Query: 59  NFYDKINLVNFMYLY 103
           ++Y  +NL    Y+Y
Sbjct: 43  DYYQNLNLGEIYYIY 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,450
Number of Sequences: 438
Number of extensions: 677
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 37
effective length of database: 130,137
effective search space used:  2602740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)