Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12g12
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              33   0.003
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              25   0.58 
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    25   0.58 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   3.1  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   4.1  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   4.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   7.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 17/68 (25%), Positives = 27/68 (39%)
 Frame = -3

Query: 263 GSRRSLSMGINGRYCTHTCPTSCPDSYDPQCAISQTGQKKVFANHCKMDYNSCLYGVAWY 84
           G  +   +  N       C   CP  + P CA       K++ANHC++   +C  G +  
Sbjct: 88  GIGKECELSPNSTIAVCVCMRKCPRRHRPVCA----SNGKIYANHCELHRAACHSGSSLT 143

Query: 83  MRPLSECV 60
              L  C+
Sbjct: 144 KSRLMRCL 151


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 16  FTKALFCCRSAFLPPTHSERGRMYQATPYK 105
           F+K  +CCR ++L   H      Y A   K
Sbjct: 87  FSKECYCCRESYLKERHITLHHCYDADGIK 116


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 16  FTKALFCCRSAFLPPTHSERGRMYQATPYK 105
           F+K  +CCR ++L   H      Y A   K
Sbjct: 87  FSKECYCCRESYLKERHITLHHCYDADGIK 116


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 650 EAPKDVLFIKAKNNEDIEKTTKAETRRHGTDTRKL 546
           E P DVL+ +   +ED  +T K  ++ +G   R L
Sbjct: 569 EVPSDVLYNRLVVSEDGSETFKYSSQPYGFPERLL 603


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 650 EAPKDVLFIKAKNNEDIEKTTKAETRRHGTDTRKL 546
           E P DVL+ +   +ED  +T K  ++ +G   R L
Sbjct: 569 EVPSDVLYNRLVVSEDGSETFKYSSQPYGFPERLL 603


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = +1

Query: 445 NSLYFNCLCSNLLPHTESCVLLQSSSAQFKDLILSFLVSVPCLLVSALVVFSMSSLFFAF 624
           N+LY++ L S+ L +      ++S   +  ++    +  +     SA V+     LFF  
Sbjct: 264 NNLYYSPLTSHSLYYVNMEPFMKSQYEE-NNIEYEGIQDIFNTQSSAKVMSKNGVLFFGL 322

Query: 625 INNTSFG 645
           +NN++ G
Sbjct: 323 VNNSAIG 329


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 86  TRLHRTNRNCSPFC 127
           T  H TN  C PFC
Sbjct: 36  TMTHTTNAFCLPFC 49


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 86  TRLHRTNRNCSPFC 127
           T  H TN  C PFC
Sbjct: 35  TMTHTTNAFCLPFC 48


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = -3

Query: 410 GFKHEINRYQQVDLEKCNNTAARYNERPLPFKPIPVRSD 294
           G      RY    +     T A   E PLP  P+P   D
Sbjct: 447 GLPPSATRYDLGAVATVGTTVAPCFEEPLPSLPLPGADD 485


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 740 RNVDRFNIDEIITKK 696
           RN+D +N +++ TKK
Sbjct: 369 RNIDEYNNNDLDTKK 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,437
Number of Sequences: 438
Number of extensions: 5768
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)