Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12g08
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    24   1.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   6.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.3  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 385 VCIHILCLHIQSNHHPRKQIPVLDHN 462
           VC+ I C  + S  H RK    L+H+
Sbjct: 9   VCLSIACQDVTSAIHQRKSSKNLEHS 34


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 256 ACWNGPSRTTTVNVNCDLETK 194
           AC N    T  +N+N D ETK
Sbjct: 494 ACMNYERFTYKININSDKETK 514


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 256 ACWNGPSRTTTVNVNCDLETK 194
           AC N    T  +N+N D ETK
Sbjct: 494 ACMNYERFTYKININSDKETK 514


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 113 CARIITCSRSA*FHFVFTTERFSY*CDLC 199
           C +  TCS+    H    T    Y CD+C
Sbjct: 209 CGKGFTCSKQLKVHTRTHTGEKPYTCDIC 237


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 409 HIQSNHHPRKQIPVLDHN 462
           H+Q++HH  +   V DH+
Sbjct: 143 HLQNHHHHLQSTAVQDHH 160


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 265 NGIACWNGPSRTTTVNVNCDLETKITSVTEPFRCEYKMELST 140
           NGIACW+     T +N N  +     + T  F  +  ++ ST
Sbjct: 319 NGIACWD---TNTELNPNTFILVAENNTTMVFCNDLSIDRST 357


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 276  ITEYLLFSGPAHSPQL 323
            +T  L+   P HSPQ+
Sbjct: 1357 VTHQLIVHAPPHSPQI 1372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,172
Number of Sequences: 438
Number of extensions: 3906
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)