Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12g05
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.45 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.5  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   5.5  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   7.3  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.3  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 176 ITKCLPGKFINVTSCAKEDPPHPCDALACNTDLTKRRPCSDPPLCVQRIKNPV 18
           I + LPG  + +     +DPP  C+   CN+  TK     D  LC   +K+ +
Sbjct: 416 IEEYLPGNGVIIP----DDPPIGCECKTCNSK-TKCCFAQDDGLCPYTLKHKI 463


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 20/78 (25%), Positives = 32/78 (41%)
 Frame = +3

Query: 114 WWILFGAGSNVDEFPW*TFCYFTSMCRVLQLLHAQRGRRAFSLFLFQRITGYNRVTRVRR 293
           W+ L    S   ++ +  F  F       Q+LHA R  R   L     +    R++R+ R
Sbjct: 168 WFFLDLISSIPLDYIFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLRLSRLVR 227

Query: 294 FGFHTRFDVDFCNVFSHF 347
           +      +V F N+ S F
Sbjct: 228 YVSQWE-EVYFLNMASVF 244


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 278 HTGEAVRLSHKI*R 319
           HTGE V LSH I R
Sbjct: 115 HTGEVVWLSHGIFR 128


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 511 VQKLQDGKPLMPEDRNHDSCACS 443
           ++ L++    + E RN+  C CS
Sbjct: 340 IENLRNHPEYIDETRNYQECKCS 362


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 492 PSWSFWTVT 518
           P+W FWT T
Sbjct: 27  PAWWFWTAT 35


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = +3

Query: 114 WWILFGAGSNVDEFPW*TFCYFTSMCRVLQLLHAQRGRRAFSLFLFQRITGYNRVTRVRR 293
           W+ L    S   ++ +  F  F       Q+LHA R  R   L     +    R++R+ R
Sbjct: 168 WFFLDLISSIPLDYIFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLRLSRLVR 227

Query: 294 F 296
           +
Sbjct: 228 Y 228


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = +3

Query: 114 WWILFGAGSNVDEFPW*TFCYFTSMCRVLQLLHAQRGRRAFSLFLFQRITGYNRVTRVRR 293
           W+ L    S   ++ +  F  F       Q+LHA R  R   L     +    R++R+ R
Sbjct: 168 WFFLDLISSIPLDYIFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLRLSRLVR 227

Query: 294 F 296
           +
Sbjct: 228 Y 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,426
Number of Sequences: 438
Number of extensions: 4811
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)