Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12f22
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.3  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    27   1.3  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.3  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   3.1  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   3.1  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    25   5.4  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   7.1  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    24   9.4  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    24   9.4  

>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 110 FPKQMGFLFKILFSLQRTLEGWIAKLKLPCFVTT 9
           F   MGF+   LF +   L GW A+ K+  FV T
Sbjct: 353 FRLPMGFIGITLFEIGILLFGWTARYKIFWFVPT 386


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 110 FPKQMGFLFKILFSLQRTLEGWIAKLKLPCFVTT 9
           F   MGF+   LF +   L GW A+ K+  FV T
Sbjct: 353 FRLPMGFIGITLFEIGILLFGWTARYKIFWFVPT 386


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 110 FPKQMGFLFKILFSLQRTLEGWIAKLKLPCFVTT 9
           F   MGF+   LF +   L GW A+ K+  FV T
Sbjct: 353 FRLPMGFIGITLFEIGILLFGWTARYKIFWFVPT 386


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 147 FYSEFKNVLQVSFPETDGFSFQDIVF 70
           F +  K  L  +FP +D    +DI+F
Sbjct: 72  FQNNLKKQLSAAFPSSDTMQLEDIIF 97


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 122 KTFLNSL*KSSIALHNLSVTAVYVDARIYRIAPLC 226
           KT+ NSL  S+I +    +  V V+ RI R   LC
Sbjct: 407 KTYRNSLIVSAIGVPGSLIAGVLVEFRIGRKGTLC 441


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 196 CKDLQDSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDNN 315
           CK  Q+S   +V+   G+GA+M      D+ ++ + +  N
Sbjct: 531 CKTFQNSISHIVSSFKGEGADMYADMLQDDVDLLKSIIEN 570


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 206 KSLHQHIQLLHSNYVTQW 153
           +S H +I  L+SNY T W
Sbjct: 166 QSAHPYISSLNSNYPTTW 183


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -2

Query: 218  VLSCKSLHQHIQLLHSNYVTQWTISIVNLKMSYKFLFPKQMGFLFKILF 72
            +LSC   +Q I+++  + V + T  I+   MS  F+F +   FLF + +
Sbjct: 991  LLSCL-FNQLIEVVTEDQVDESTKGILYEIMSTLFVFSRAFPFLFDLSY 1038


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 312 IVHQS-VHLRIVVRSVDLHLRSFARAACHQHNGAIL*ILASTYTAVTLK 169
           I+H S VH+  +  S D+  + ++ +A H H   +    AST      K
Sbjct: 63  IIHDSAVHIAPLPSSCDIDFKDYSTSAFHLHFSPLTPNHASTEAVSNFK 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,607,697
Number of Sequences: 5004
Number of extensions: 32713
Number of successful extensions: 107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)