Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12f19
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0167 + 5221910-5222516,5222826-5224642                           28   7.1  
09_02_0176 + 5376868-5377205,5377703-5378831                           27   9.4  

>09_02_0167 + 5221910-5222516,5222826-5224642
          Length = 807

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +1

Query: 367 FGQFSIIFEVQNFRIVIDFTPRVVEIFLNILG 462
           FG+ S+IFEV+N  + +    RV++ F+N +G
Sbjct: 29  FGKKSLIFEVENSVMELASEFRVMQAFINHVG 60


>09_02_0176 + 5376868-5377205,5377703-5378831
          Length = 488

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 195 ILTYCDESMQTCRFLVCPNVKKSCIVCEVNVNSG 94
           ++TY D SM  CRFLV  +  KS  V       G
Sbjct: 433 MITYLDPSMGECRFLVGIDDSKSSAVSSCGCGCG 466


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,398,682
Number of Sequences: 37544
Number of extensions: 241306
Number of successful extensions: 548
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)