Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12f19
         (637 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT024452-1|ABC86514.1|  594|Drosophila melanogaster GH15831p pro...    32   0.57 
AE014297-2828|AAF55789.2|  594|Drosophila melanogaster CG5466-PA...    32   0.57 

>BT024452-1|ABC86514.1|  594|Drosophila melanogaster GH15831p
           protein.
          Length = 594

 Score = 32.3 bits (70), Expect = 0.57
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 1/130 (0%)
 Frame = -2

Query: 459 KNVQEYFYNPWSKINDNTKILNFKNNGELTERHLRKDHVVNLRNKVITPFRDVIKENDTS 280
           KNV +   +    I  N  +L   N    T    R DH+   ++K++  F ++++     
Sbjct: 450 KNVADSLRSNLDSIESNKDLLALHNGAWATGDANRMDHLAVGQDKIVRIFAELMR----- 504

Query: 279 KWNATRIIHKVRDFMKSTYTELKPAAQKILTYCDESMQTCR-FLVCPNVKKSCIVCEVNV 103
             N +R+   +R  M   Y +   + QK L    + +QT R  L  P++  S    E   
Sbjct: 505 --NMSRMKTYIRPSMCKPYGKQSESLQKTLMDTIQIVQTLRNCLPAPHIPVSSWKSESEG 562

Query: 102 NSGSDSNSTV 73
           N GS  ++ V
Sbjct: 563 NVGSGVSAGV 572


>AE014297-2828|AAF55789.2|  594|Drosophila melanogaster CG5466-PA
           protein.
          Length = 594

 Score = 32.3 bits (70), Expect = 0.57
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 1/130 (0%)
 Frame = -2

Query: 459 KNVQEYFYNPWSKINDNTKILNFKNNGELTERHLRKDHVVNLRNKVITPFRDVIKENDTS 280
           KNV +   +    I  N  +L   N    T    R DH+   ++K++  F ++++     
Sbjct: 450 KNVADSLRSNLDSIESNKDLLALHNGAWATGDANRMDHLAVGQDKIVRIFAELMR----- 504

Query: 279 KWNATRIIHKVRDFMKSTYTELKPAAQKILTYCDESMQTCR-FLVCPNVKKSCIVCEVNV 103
             N +R+   +R  M   Y +   + QK L    + +QT R  L  P++  S    E   
Sbjct: 505 --NMSRMKTYIRPSMCKPYGKQSESLQKTLMDTIQIVQTLRNCLPAPHIPVSSWKSESEG 562

Query: 102 NSGSDSNSTV 73
           N GS  ++ V
Sbjct: 563 NVGSGVSAGV 572


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,952,683
Number of Sequences: 53049
Number of extensions: 459981
Number of successful extensions: 1036
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)