Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12f19
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81104-9|CAB70252.3| 488|Caenorhabditis elegans Hypothetical pr... 33 0.17
U97012-4|AAK39148.1| 340|Caenorhabditis elegans Serpentine rece... 31 0.52
Z70208-8|CAA94143.1| 196|Caenorhabditis elegans Hypothetical pr... 31 0.69
U53342-2|AAA96214.1| 272|Caenorhabditis elegans Suppressor of a... 31 0.69
U53342-1|AAA96213.2| 371|Caenorhabditis elegans Suppressor of a... 31 0.69
AF016442-2|AAB65919.1| 203|Caenorhabditis elegans Hypothetical ... 30 1.6
U41556-4|AAY44020.2| 260|Caenorhabditis elegans Hypothetical pr... 29 2.8
AC006670-3|ABC71823.1| 350|Caenorhabditis elegans Patched relat... 29 2.8
AC006670-2|ABC71822.1| 901|Caenorhabditis elegans Patched relat... 29 2.8
AC090999-21|AAK26150.1| 530|Caenorhabditis elegans Hypothetical... 29 3.7
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr... 28 6.4
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 27 8.5
>Z81104-9|CAB70252.3| 488|Caenorhabditis elegans Hypothetical
protein M199.2 protein.
Length = 488
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/67 (22%), Positives = 32/67 (47%)
Frame = -2
Query: 351 DHVVNLRNKVITPFRDVIKENDTSKWNATRIIHKVRDFMKSTYTELKPAAQKILTYCDES 172
D V+ L N+ DV+ + + S W++ ++ VR +S + ++ A ++ Y S
Sbjct: 305 DRVLTLPNRKWFQISDVVTDGEVSNWSSANLVTHVRALARSVFDKVDEADPHMMCYA-TS 363
Query: 171 MQTCRFL 151
C ++
Sbjct: 364 QNACIYV 370
>U97012-4|AAK39148.1| 340|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 16 protein.
Length = 340
Score = 31.5 bits (68), Expect = 0.52
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +2
Query: 200 CAAGFSSVYVDFIKSRTLCIILVAFHLLVSFSFITSRNGVITLFLRFTTWSFLRCLSVSS 379
CA GFS S +I A+ L+ F RN ++ + L F SFL+ ++ +
Sbjct: 94 CAVGFSLYLHTLTHSIWSLLISFAYRYLILFKTTFKRNNILLVILAFYFPSFLQAVTYWT 153
Query: 380 PLFLKFKI 403
+F+I
Sbjct: 154 NFVERFEI 161
>Z70208-8|CAA94143.1| 196|Caenorhabditis elegans Hypothetical
protein F54B11.8 protein.
Length = 196
Score = 31.1 bits (67), Expect = 0.69
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = +2
Query: 161 HVCIDSSQ*VKIFCAAGFS-SVYVDFIKSRTLCIILVAFHLLVSFSFITSRNGVITLFLR 337
++ +D +Q ++ G S S+Y DF++ C L L + SR + +F+
Sbjct: 104 YINLDCTQTAAMYLLKGTSPSLYKDFLEDTLCCEYLSNTFLKLKLKIAASRTCFLIIFML 163
Query: 338 FTTWSFLRCLS---VSSPLFLKFKIFVLSL 418
F + + C + S+ L LK K F ++
Sbjct: 164 FLIFKIIVCTNGQITSNYLNLKNKTFFFNM 193
>U53342-2|AAA96214.1| 272|Caenorhabditis elegans Suppressor of
activated let-60ras protein 7, isoform a protein.
Length = 272
Score = 31.1 bits (67), Expect = 0.69
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Frame = +1
Query: 217 FSVCRFHKITNFVYYSGSVPFTCIIFFYNITE------WSNHFIS*IYNMVLS*V--SFG 372
++ H + NF+ T +IFFYN+ E W NH + + +++L+ V S
Sbjct: 33 YNALSIHFVPNFIALVAPPVLTILIFFYNVNELDYFFGWLNHHLEPVTSILLTIVCISIA 92
Query: 373 QFSIIFEVQ 399
+S+I + Q
Sbjct: 93 IYSLIRKKQ 101
>U53342-1|AAA96213.2| 371|Caenorhabditis elegans Suppressor of
activated let-60ras protein 7, isoform b protein.
Length = 371
Score = 31.1 bits (67), Expect = 0.69
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Frame = +1
Query: 217 FSVCRFHKITNFVYYSGSVPFTCIIFFYNITE------WSNHFIS*IYNMVLS*V--SFG 372
++ H + NF+ T +IFFYN+ E W NH + + +++L+ V S
Sbjct: 174 YNALSIHFVPNFIALVAPPVLTILIFFYNVNELDYFFGWLNHHLEPVTSILLTIVCISIA 233
Query: 373 QFSIIFEVQ 399
+S+I + Q
Sbjct: 234 IYSLIRKKQ 242
>AF016442-2|AAB65919.1| 203|Caenorhabditis elegans Hypothetical
protein K12B6.4 protein.
Length = 203
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Frame = +1
Query: 298 YNITEWSNHFIS*IYNMVLS*VSFGQFSIIFEVQNFR------IVIDFTPRVVEIFLNIL 459
+N T WS ++ + SF FSI+ V +F+ +V +FT VV IF+N+L
Sbjct: 65 FNATIWSESWVELGMAWYVGFGSFWLFSILILVLSFKYYRPVFVVPNFTALVVGIFMNLL 124
Query: 460 GKKITIIR 483
+ + R
Sbjct: 125 AFGVLLAR 132
>U41556-4|AAY44020.2| 260|Caenorhabditis elegans Hypothetical
protein C25B8.8 protein.
Length = 260
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = +1
Query: 175 FITISQNFLCSRF*FSVCRFHKITNFVYYSGSVPFTCIIF----FYNITEW-SNHFIS 333
F+ S FL +C +ITN Y G+VPFT +F Y+ W +FIS
Sbjct: 152 FLLFSTIFLQLLHLCGIC-ISRITNMCYSFGAVPFTLFVFGLEMHYSTCPWLDEYFIS 208
>AC006670-3|ABC71823.1| 350|Caenorhabditis elegans Patched related
family protein12, isoform b protein.
Length = 350
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +2
Query: 212 FSSVYVD--FIKSRTLCIILVAFHLLV 286
FSS+Y+ F+K+ C+IL FH LV
Sbjct: 297 FSSIYMSCAFVKTMITCMILCVFHALV 323
>AC006670-2|ABC71822.1| 901|Caenorhabditis elegans Patched related
family protein12, isoform a protein.
Length = 901
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +2
Query: 212 FSSVYVD--FIKSRTLCIILVAFHLLV 286
FSS+Y+ F+K+ C+IL FH LV
Sbjct: 848 FSSIYMSCAFVKTMITCMILCVFHALV 874
>AC090999-21|AAK26150.1| 530|Caenorhabditis elegans Hypothetical
protein Y82E9BR.2 protein.
Length = 530
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -2
Query: 417 NDNTKILNFKNNGELTERHLRKDHVVNLRNKVITPFRDVIKEND 286
NDN ++ + LR+ +N+ N ++TP D +K++D
Sbjct: 360 NDNVNGSQQIQTNQIKQAELRQRRFINVVNNLVTPDADNVKKSD 403
>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical
protein C14C10.5 protein.
Length = 1908
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = -2
Query: 360 LRKDHVVNLRNKVIT-PFRDVIKENDTSKWNATRIIHKVRDFMKSTYTELKPAAQKILTY 184
L H++ L +K+++ + +E + TR + + + M+ T L +L
Sbjct: 387 LHTQHIMVLLSKLLSNTILRLKRERSEKTQHRTRTLTPIPEHMRLTQAHLDELVNLMLP- 445
Query: 183 CDESM---QTCRFLVCPNVKKSCIVC 115
C + M ++C+ LV P + +C++C
Sbjct: 446 CLKLMAFTKSCKELVSPAFRSACLLC 471
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = -2
Query: 366 RHLRKDHVVNLRNKVITPFRDVIKENDT---SKWNATRIIHKVRDFMKSTYTELKPAAQK 196
R R+++ + K+I+ + I D ++ N+TR I + ++ + T K QK
Sbjct: 1015 RFARQNNTIGDMQKLISELNEKIARFDNIALNERNSTRKIEREKEKLNEELTTAKEIIQK 1074
Query: 195 ILTYCDESMQTCR 157
DE + CR
Sbjct: 1075 QAKKIDELKEECR 1087
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,300,035
Number of Sequences: 27780
Number of extensions: 274252
Number of successful extensions: 826
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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