Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12f18
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476...    30   1.3  
05_05_0351 - 24319356-24319385,24319470-24320902,24321011-243211...    29   2.3  
10_02_0046 + 4533959-4533988,4534061-4534136,4534225-4535111,454...    28   7.0  
08_02_0776 - 21083181-21083187,21083256-21083683,21083800-210840...    28   7.0  
06_03_1333 - 29410014-29410052,29410071-29410322,29410601-294106...    27   9.3  
01_01_0689 - 5287110-5287209,5287444-5287691,5287935-5288107,528...    27   9.3  

>08_02_0733 + 20546072-20546325,20546924-20547017,20547441-20547624,
            20547722-20547831,20548328-20548423,20548525-20548679,
            20548743-20548986,20549159-20549314,20549600-20549829,
            20552213-20552316,20552420-20552505,20552776-20553066,
            20553383-20553475,20553640-20553735,20553838-20553939,
            20554196-20554266,20554784-20555035,20555786-20556529,
            20557038-20557119,20557192-20557347,20557446-20557655,
            20558282-20558665
          Length = 1397

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -3

Query: 349  QTETSNQESDHKNYDNPFPVHKNGHHIQSTSTDSCYEETT---GSNCECG 209
            +T +S  ++D + +D+PFPVH + H  +    D  ++E T      C CG
Sbjct: 1343 KTRSSRLQAD-RPFDSPFPVHDHEH--EYPEEDQSFDEETFVRTKRCPCG 1389


>05_05_0351 -
           24319356-24319385,24319470-24320902,24321011-24321180,
           24321302-24321485,24323094-24323264,24324002-24324125
          Length = 703

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 292 VHKNGHHIQSTSTDS--CYEETTGSNCECGHPKNQSRNKTCT 173
           +H +G H+  +  DS     +  GS+   G  KN++R +TCT
Sbjct: 142 LHLHGGHVSQSPPDSNALSSQRFGSSSPGGDMKNKTRKRTCT 183


>10_02_0046 +
           4533959-4533988,4534061-4534136,4534225-4535111,
           4546711-4546746
          Length = 342

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 117 PSSQAPIKMETDEPMSHKRKREERR 43
           PS + P K + DE  S KRKRE+ +
Sbjct: 79  PSREKPSKADGDEGTSKKRKREQAK 103


>08_02_0776 -
           21083181-21083187,21083256-21083683,21083800-21084048,
           21084172-21084248,21084351-21084483
          Length = 297

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 277 HHIQSTSTDSCYEETTGSNCE 215
           HH QS +TDSC   T+ S  E
Sbjct: 216 HHRQSAATDSCVTTTSSSEAE 236


>06_03_1333 - 29410014-29410052,29410071-29410322,29410601-29410633,
            29411035-29411045,29411420-29415325,29415437-29415920
          Length = 1574

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 476  VHFVKVSPCCDVSASEATHLTIGLISENTYF 384
            + ++ V+P C++ AS  T LTIG   E  +F
Sbjct: 1355 ITWLLVAPVCNILASSLTELTIGWNDEVEHF 1385


>01_01_0689 -
           5287110-5287209,5287444-5287691,5287935-5288107,
           5288913-5289060,5289537-5289696,5290021-5290166,
           5290963-5291191,5291901-5292123,5292253-5292401,
           5293501-5293670,5294188-5294259,5294363-5294443,
           5296180-5296311,5296381-5296468,5296841-5297054,
           5297501-5297684,5298069-5298152,5299002-5299131,
           5299280-5299650,5299684-5299967,5300932-5301247
          Length = 1233

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -3

Query: 313 NYDNPFPVHKNGHHIQSTSTDSCYEETTGSNCECGHPKNQSRNKTCTEI 167
           N   PF +H NG  ++  +              CGH  + S+N+ C E+
Sbjct: 145 NQQMPFHLHGNGGSVRQIARLVPQLAQLTVESPCGHTSSVSQNQGCIEV 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,047,144
Number of Sequences: 37544
Number of extensions: 242527
Number of successful extensions: 555
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)