Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12f16
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar... 156 3e-39
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 93 3e-20
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 29 0.81
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 28 1.1
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch... 26 5.7
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 25 7.6
SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch... 25 7.6
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 25 10.0
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom... 25 10.0
>SPBC354.02c |sec61||translocon alpha subunit
Sec61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 156 bits (378), Expect = 3e-39
Identities = 73/125 (58%), Positives = 88/125 (70%)
Frame = -2
Query: 653 GLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQM 474
GL YYLSPP S DP+H L+YV F + +CA FSK WI+VSG+S +DVAKQLK QQ+
Sbjct: 340 GLSYYLSPPASFQDALIDPIHTLVYVFFTMFACALFSKLWIEVSGASPRDVAKQLKSQQL 399
Query: 473 VMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFE 294
VM GHR+ SM EL R IPTAA G +GAL+V +D LGA+GSGT +LL T IY Y+E
Sbjct: 400 VMAGHREGSMYKELKRIIPTAAWLSGAVVGALAVASDLLGALGSGTAVLLCTTTIYGYYE 459
Query: 293 IFVKE 279
KE
Sbjct: 460 QLQKE 464
>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 93.1 bits (221), Expect = 3e-20
Identities = 45/132 (34%), Positives = 72/132 (54%)
Frame = -2
Query: 659 VGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQ 480
VGGL Y+L PP L+ PVH ++Y + ++ +FS W++ + +DV KE
Sbjct: 342 VGGLVYFLYPPLGLSEALLHPVHTVIYTITLICITIYFSLLWMNATAGGPRDVLLFFKEN 401
Query: 479 QMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQY 300
Q+V+ G+R+ +M+ EL + IP AA + LSV+A A G G+L+A ++Y
Sbjct: 402 QLVIAGYREATMLKELEKIIPIAAKLSAFFVSILSVIAGIF-ASTFGVGVLIASALVYAS 460
Query: 299 FEIFVKEQAEMG 264
FE+ V +G
Sbjct: 461 FEMIVGANTSLG 472
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 28.7 bits (61), Expect = 0.81
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 540 DLDRCVWLLSQRCGETTEGTAD 475
+LD+CVW L + C E E +D
Sbjct: 378 ELDKCVWFLLKNCDEFIENFSD 399
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -2
Query: 434 LNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ--AEMGG 261
+N +I G IGA +A L TGI++ + I+ ++F + MGG
Sbjct: 319 VNDHIEAFINISGSLIGAPKTVAALLSGEMKDTGIVITLNILEKFFSRSERAMMVRTMGG 378
Query: 260 MSTLL 246
+S++L
Sbjct: 379 VSSML 383
>SPAC1486.06 |||nicotinate phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 410
Score = 25.8 bits (54), Expect = 5.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2
Query: 215 DRCVQLRFYCRFCSESTSLGV 153
DRC++L YC C ++ G+
Sbjct: 326 DRCIELYKYCEKCGIKSAFGI 346
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 346 PMAPRKSASTDRAPMHSPPNAAAVGM*RFSSWI 444
PMA RK A T R + + G+ R SSW+
Sbjct: 102 PMATRKIAGTYRDAPDNSMQQTSTGVHRSSSWL 134
>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 548 FSKTWID-VSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRY 423
+S T ID + G +K++A L + +RD ++H LN +
Sbjct: 350 YSSTEIDLIKGKRSKEIASILGYNETEYVAYRDYLVVHGLNSH 392
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 528 CVWLLSQRCGETTEGTADGDARSPRQLHDPRTEPLHPDG 412
C +L++ TT T D +AR RQL + +EP+ G
Sbjct: 54 CTKVLNELEEITTHTTYDSNARVLRQLCEHASEPVDETG 92
>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 132
Score = 25.0 bits (52), Expect = 10.0
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -2
Query: 614 HIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNS 447
+I +H L +LF L C + S TW V + A+ V L+ + DNS
Sbjct: 39 YIGTKSIHCL--ILFFLAICLWLSLTWFLVELAHAR-VNNDLQMSSQSANKNDDNS 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,032
Number of Sequences: 5004
Number of extensions: 48301
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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