Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12f16
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0577 - 10862976-10863215,10863653-10863788,10863906-108640... 215 2e-56
09_02_0576 - 10853361-10853600,10854033-10854168,10854285-108544... 215 2e-56
03_02_0140 + 5864612-5864955,5865154-5865381,5865460-5865814,586... 215 2e-56
09_04_0707 + 19645471-19646112 137 7e-33
09_04_0704 + 19623046-19623386,19623583-19623792,19623872-196242... 91 1e-18
12_02_1087 - 25949878-25950369,25950386-25950944,25950988-25951388 71 9e-13
12_02_1195 + 26906814-26907121,26907771-26907992,26908913-269091... 64 1e-10
12_02_1185 + 26786543-26786545,26786676-26786686,26787032-267872... 49 3e-06
02_01_0286 + 1921049-1921726 31 0.84
01_05_0278 - 20313373-20313387,20314617-20315240 31 0.84
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814 30 1.5
02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356 30 1.5
11_06_0611 + 25461469-25461655,25461670-25462238 29 2.6
10_02_0138 - 5745893-5745924,5746824-5747580 29 2.6
04_04_1596 + 34684943-34686340,34688085-34688175,34688290-346883... 29 2.6
08_01_0259 + 2123393-2123555,2123670-2124070 29 3.4
04_01_0122 + 1267048-1267149,1267764-1267855,1268137-1268234,126... 29 3.4
02_05_0593 - 30217432-30218232 29 3.4
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 29 3.4
04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985 28 5.9
04_04_0869 - 28883688-28884983 28 5.9
02_03_0182 + 16101861-16101955,16102226-16102372,16102465-161025... 28 5.9
01_06_1229 + 35551522-35552169 28 5.9
10_01_0146 - 1719997-1720386,1721498-1721515 28 7.8
09_04_0514 - 18236061-18237392 28 7.8
05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141... 28 7.8
03_02_1012 + 13207907-13207990,13209196-13209280,13209402-132101... 28 7.8
02_03_0085 + 15063444-15063889,15064324-15065311 28 7.8
02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810 28 7.8
>09_02_0577 -
10862976-10863215,10863653-10863788,10863906-10864030,
10864132-10864516,10864571-10864798,10864976-10865319
Length = 485
Score = 215 bits (526), Expect = 2e-56
Identities = 102/136 (75%), Positives = 119/136 (87%), Gaps = 1/136 (0%)
Frame = -2
Query: 668 AAPVGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQL 489
+ PVGGL YY++ P SLA + +P HAL YV+FML +CA FSKTWI+VSGSSAKDVAKQL
Sbjct: 346 SVPVGGLAYYVTAPSSLADVLANPFHALFYVVFMLSACALFSKTWIEVSGSSAKDVAKQL 405
Query: 488 KEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTII 309
KEQQMVM GHR++++ ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTII
Sbjct: 406 KEQQMVMPGHRESNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTII 465
Query: 308 YQYFEIFVKEQA-EMG 264
YQYFE F KE+A E+G
Sbjct: 466 YQYFETFEKERATELG 481
>09_02_0576 -
10853361-10853600,10854033-10854168,10854285-10854409,
10854487-10854871,10854934-10855161,10855332-10855675
Length = 485
Score = 215 bits (526), Expect = 2e-56
Identities = 102/136 (75%), Positives = 119/136 (87%), Gaps = 1/136 (0%)
Frame = -2
Query: 668 AAPVGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQL 489
+ PVGGL YY++ P SLA + +P HAL YV+FML +CA FSKTWI+VSGSSAKDVAKQL
Sbjct: 346 SVPVGGLAYYVTAPSSLADVLANPFHALFYVVFMLSACALFSKTWIEVSGSSAKDVAKQL 405
Query: 488 KEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTII 309
KEQQMVM GHR++++ ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTII
Sbjct: 406 KEQQMVMPGHRESNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTII 465
Query: 308 YQYFEIFVKEQA-EMG 264
YQYFE F KE+A E+G
Sbjct: 466 YQYFETFEKERATELG 481
>03_02_0140 +
5864612-5864955,5865154-5865381,5865460-5865814,
5865899-5866023,5866150-5866285,5866382-5866621
Length = 475
Score = 215 bits (526), Expect = 2e-56
Identities = 102/136 (75%), Positives = 119/136 (87%), Gaps = 1/136 (0%)
Frame = -2
Query: 668 AAPVGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQL 489
+ PVGGL YY++ P SLA + +P HAL YV+FML +CA FSKTWI+VSGSSAKDVAKQL
Sbjct: 336 SVPVGGLAYYVTAPSSLADVLANPFHALFYVVFMLSACALFSKTWIEVSGSSAKDVAKQL 395
Query: 488 KEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTII 309
KEQQMVM GHR++++ ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTII
Sbjct: 396 KEQQMVMPGHRESNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTII 455
Query: 308 YQYFEIFVKEQA-EMG 264
YQYFE F KE+A E+G
Sbjct: 456 YQYFETFEKERATELG 471
>09_04_0707 + 19645471-19646112
Length = 213
Score = 137 bits (332), Expect = 7e-33
Identities = 67/131 (51%), Positives = 89/131 (67%), Gaps = 2/131 (1%)
Frame = -2
Query: 662 PVGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 483
PVGG+ YY++PP L+H A Y +L SC FS W++VS SSA+DVA+QL
Sbjct: 90 PVGGVAYYVTPPAGLSHAA-------AYAASLLASCTLFSGAWVEVSRSSAQDVARQLSV 142
Query: 482 QQMVMRG--HRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTII 309
Q++ + G RD ++ L+RYI TAAA GGLC+GAL++LAD GAIGSGTGILLA T++
Sbjct: 143 QRLALHGARERDAALRSHLSRYISTAAALGGLCVGALTILADMTGAIGSGTGILLAATVV 202
Query: 308 YQYFEIFVKEQ 276
Y + F KE+
Sbjct: 203 YNLIDAFQKEE 213
>09_04_0704 +
19623046-19623386,19623583-19623792,19623872-19624223,
19624320-19624444,19624578-19624668,19624817-19625050
Length = 450
Score = 90.6 bits (215), Expect = 1e-18
Identities = 49/136 (36%), Positives = 70/136 (51%)
Frame = -2
Query: 671 RAAPVGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQ 492
++ PVGG+ YYL P LA + DP HA +YV F+L SC F S +
Sbjct: 327 QSIPVGGIVYYLRTPPILADLHRDPFHAFIYVAFVLISCVFIS-------------MGLM 373
Query: 491 LKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 312
++E++ + D+ +E+ R++ AA GG C G L + AD +G SGTGI+LAVT
Sbjct: 374 MQEERRLRLAQPDSIHANEIRRHVMRAACVGGFCAGVLIIFADLIGVFCSGTGIMLAVTA 433
Query: 311 IYQYFEIFVKEQAEMG 264
Y Y + E G
Sbjct: 434 SYPYVDGRASEVGSFG 449
>12_02_1087 - 25949878-25950369,25950386-25950944,25950988-25951388
Length = 483
Score = 70.9 bits (166), Expect = 9e-13
Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 3/130 (2%)
Frame = -2
Query: 668 AAPVGGLCYYLSPPESLAHIAHDPVHALL-YVLFMLGSCAFFSKTWIDVSGSSAKDVAKQ 492
A PVGGL YY++PP L + +H LL + +F++ SC S W + S SSA++
Sbjct: 349 AYPVGGLVYYVTPPSKLL-VDPGLIHELLIHSVFVVASCTLLSMAWAEASRSSAREF--- 404
Query: 491 LKEQQMVMRGHRD-NSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIG-SGTGILLAV 318
+++ G+ + ++R I AAA GG +G L+V A +GAIG +G +L AV
Sbjct: 405 --RTRVIGTGYFVWDETSRRIDRVIAAAAAVGGFAVGGLAVYAGAVGAIGEAGPELLFAV 462
Query: 317 TIIYQYFEIF 288
+I E F
Sbjct: 463 LVIKNLAETF 472
>12_02_1195 +
26906814-26907121,26907771-26907992,26908913-26909153,
26909512-26909642,26910336-26910474,26910600-26910810,
26911371-26911759
Length = 546
Score = 64.1 bits (149), Expect = 1e-10
Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Frame = -2
Query: 662 PVGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 483
PV + Y++ P S I +LLY +F+L CAF S V S+K +L
Sbjct: 288 PVARIASYVTTPPSFGEIVTGDPGSLLYAVFLLTGCAFLSLFCFKVCAKSSKRYLVRLVG 347
Query: 482 QQMVMRGHRDNSMI---------HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGI 330
+ R D+ + + RY+ AA F G C+G LS+LA FLG G I
Sbjct: 348 KPKQTRLSPDDEQLPDEDESISPKQCRRYMTIAAIFVGFCVGFLSLLAGFLGL--DGPAI 405
Query: 329 LLAVTIIYQYFEIFVKEQAEMGGMSTLLF 243
+LAVT+I+ V++ +E G+ ++
Sbjct: 406 MLAVTVIHS----VVQDHSESDGIRAKVY 430
>12_02_1185 +
26786543-26786545,26786676-26786686,26787032-26787262,
26787892-26788012,26788263-26788393,26788718-26788760,
26788963-26789220
Length = 265
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = -2
Query: 494 QLKEQQMVMRGHRDNSMIHELNRYIPTAAAF-GGLCIGALSVLADFLGAIGSGTGILLAV 318
++ +Q++ D S+ R+ T AA+ G+C+G L++LA F+G GSG I+LAV
Sbjct: 186 RVSPEQLLQEHDEDESISPRRCRHYMTMAAYIVGICVGLLNLLAGFMGLGGSGPAIMLAV 245
Query: 317 TIIYQYFE 294
T+I+ E
Sbjct: 246 TVIHNLVE 253
>02_01_0286 + 1921049-1921726
Length = 225
Score = 31.1 bits (67), Expect = 0.84
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = -1
Query: 477 DGDARSPRQLHDPRTEPLHPDGGRVR---RTVHRGSVSAGRLPRGHRLRHWDTARRHHHL 307
DGD + R H G R R R RG + GR RG RL+ + R H +
Sbjct: 135 DGDGTAGR--HTGEAAEAAGGGRRHRIETRATGRGGAATGR--RGRRLKRENGGRGFHFI 190
Query: 306 PVLRDLCQGTSGDG 265
RDL G +G+G
Sbjct: 191 GEGRDLATGGAGNG 204
>01_05_0278 - 20313373-20313387,20314617-20315240
Length = 212
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 313 MVTASSIPVPEPMAPRKSASTDRAPMHSPPNAAAVG 420
M + S P P P +P +S + + MH PP+ AA G
Sbjct: 1 MGASCSSPFPPPPSPAESNAPSASAMHHPPHPAAGG 36
>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
Length = 775
Score = 30.3 bits (65), Expect = 1.5
Identities = 28/81 (34%), Positives = 34/81 (41%)
Frame = -1
Query: 462 SPRQLHDPRTEPLHPDGGRVRRTVHRGSVSAGRLPRGHRLRHWDTARRHHHLPVLRDLCQ 283
SPR+ H R P +P+ R RRT R PR H H D+ H HLP D
Sbjct: 31 SPRRHH--RAPPSNPNPHRDRRTPDR--------PRRH--HHEDSLPLHVHLPPPPDALL 78
Query: 282 GTSGDGRHEHTALLSLVMIAA 220
+ D R LL +AA
Sbjct: 79 TAAADRRSRADVLLEAGRLAA 99
>02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356
Length = 444
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 328 SIPVPEPMAPRKSASTDRAPMHSPP 402
++ VPEP+ PR A P+H PP
Sbjct: 79 AVLVPEPLPPRTDAPMPEIPIHPPP 103
>11_06_0611 + 25461469-25461655,25461670-25462238
Length = 251
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +1
Query: 247 SSVLMPPISACSLTKISKYW*MMVTASSIPVPEPMAPRKSASTDRAPMHSPPNAAAVG 420
SS P S+ SL+++ W + S P P P A ++ RA SPP + G
Sbjct: 76 SSSQPPSTSSSSLSQLPPPWPLAPACLSPPPPLPRAETGRSAASRATAASPPVGSGGG 133
>10_02_0138 - 5745893-5745924,5746824-5747580
Length = 262
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 95 IFSIKYNDAFTSNTTR--YENVHLMMSIQSRNDNKNGAERSGPTAAIITRLRRA 250
+ ++Y DA T +T + ++ + L++ +DN N A R + LRRA
Sbjct: 76 VLGMRYGDAATLDTIKDQFQRLSLLLLHHPDDDNNNNAGRRAAVEGAVELLRRA 129
>04_04_1596 +
34684943-34686340,34688085-34688175,34688290-34688354,
34688530-34688581,34688747-34688829,34688942-34689035,
34689468-34690051
Length = 788
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +1
Query: 328 SIPVPEPMAPRKSASTDRAPMHSPPNAA 411
S P+P P +PR S+S+ R+P SPP+++
Sbjct: 115 SEPLPHP-SPRVSSSSPRSPTPSPPSSS 141
>08_01_0259 + 2123393-2123555,2123670-2124070
Length = 187
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 328 SIPVPEPMAPRKSASTDRAPMHSPPNA 408
S P P PM PR T AP PP A
Sbjct: 126 SNPAPSPMTPRPRTPTAMAPNAMPPTA 152
>04_01_0122 +
1267048-1267149,1267764-1267855,1268137-1268234,
1268333-1268488,1268736-1269355,1269480-1269547,
1269848-1270099,1270390-1270525,1271054-1271246,
1271386-1271939
Length = 756
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 498 ETTEGTADGDARSPRQLHDPRTEPLHPDGGRVRRTVHRGSVSAG 367
+ GT D + SPR +H T GG + V R ++AG
Sbjct: 198 DVPNGTLDTEVLSPRDVHGHGTHTASTAGGNIVHNVSRLGLAAG 241
>02_05_0593 - 30217432-30218232
Length = 266
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 313 MVTASSIPVPEPMAPRKSASTDRAPMHSPPNAAA 414
++T+ + P K STD + H PPNA A
Sbjct: 171 VITSPAAEAPSSATESKPNSTDASSKHGPPNAGA 204
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 319 TASSIPVPEPMAPRKSASTDRAPMHSPPNAAAV 417
+A +P P+P PR A D+AP+ P AAV
Sbjct: 184 SAPPLP-PQPPPPRNQAQADKAPIPVAPPGAAV 215
>04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985
Length = 773
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 165 CRFRAETTIKTELNAAVRLPLSLRDLEEQCAHAAHLRLFLDKDLEVLVNDGDG 323
C +A T + +++ A L+L+ A FLDKD +V + GDG
Sbjct: 192 CADKACCTTEMQMDGAQEFNLTLKPSGNVEASTCSAVFFLDKDEQVFTSAGDG 244
>04_04_0869 - 28883688-28884983
Length = 431
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 328 SIPVPEPMAPRKSASTDRAPMHSPP 402
S P P P A K ++P HSPP
Sbjct: 354 SSPAPSPKAAGKKKKKGKSPSHSPP 378
>02_03_0182 +
16101861-16101955,16102226-16102372,16102465-16102515,
16102617-16102782,16103055-16103283,16104067-16104638
Length = 419
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = -1
Query: 423 HPDG---GRVRRTVHRGSVSAGRLPRGHRLRHWDTARRHHHLPVLRD 292
+PDG G T+ ++ GRLP L H+ +RR H + RD
Sbjct: 188 YPDGHPFGTEFLTIAGDDLAVGRLPINDHLVHFFLSRRRHSTDMARD 234
>01_06_1229 + 35551522-35552169
Length = 215
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 450 LHDPRTEPLHPDGGRVRRTVHRGSVSAGRLPRGHRLR 340
+HDPR P+HP + T G + GR+ G R R
Sbjct: 1 MHDPRGFPIHPQPYHLHPTA--GGLGEGRMRGGGRRR 35
>10_01_0146 - 1719997-1720386,1721498-1721515
Length = 135
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/53 (39%), Positives = 23/53 (43%)
Frame = -1
Query: 489 EGTADGDARSPRQLHDPRTEPLHPDGGRVRRTVHRGSVSAGRLPRGHRLRHWD 331
E TADG + R L R + PD G RR R S A PR R WD
Sbjct: 61 ETTADGGGAALRLL-QLRAAEMQPDDGGQRR--RRRSEPATTQPRRRASRGWD 110
>09_04_0514 - 18236061-18237392
Length = 443
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 301 YW*MMVTASSIPVPEPMAPRKSASTDRAPMH 393
+W A S+PVPEP+AP +A + H
Sbjct: 86 HWWSRAPARSLPVPEPVAPLVAAPRGGSHSH 116
>05_04_0284 -
19813179-19813340,19813464-19813748,19813850-19814131,
19814224-19814531,19814654-19814927,19815807-19816175,
19816372-19816434,19817495-19817789,19817818-19818008,
19818123-19818428,19818516-19818638
Length = 885
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 279 FLDKDLEVLVNDGDGEQYPSAGADGP 356
+LD D+ V++ND P+A DGP
Sbjct: 252 YLDSDMIVILNDNKQVSLPTATLDGP 277
>03_02_1012 + 13207907-13207990,13209196-13209280,13209402-13210186,
13210262-13210462,13210580-13210690,13211105-13211487,
13211594-13211702,13211786-13211866,13212088-13212156,
13212379-13212467,13212619-13212780,13212859-13212916,
13213143-13213373,13213516-13213662,13213779-13214333,
13214562-13214819,13215096-13215203,13215760-13215854,
13215946-13216102,13216466-13216666,13217542-13217670,
13218292-13218567
Length = 1457
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 303 LVNDGDGEQYPSAGADGPEEVGQH*QSPDAQSSERGRRR 419
L D + EQ P+ D P E ++ SPD +E + R
Sbjct: 1415 LNEDKEPEQEPTTDGDNPAEAAENNISPDDNDTEEAKDR 1453
>02_03_0085 + 15063444-15063889,15064324-15065311
Length = 477
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 402 RRTVHRGSVSAGRLPRGHRLRHWDTARRHHHLP 304
RR R +S+ RLP L HW RR LP
Sbjct: 22 RRLRLRAILSSSRLPTTTPLHHWPRRRRSRGLP 54
>02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810
Length = 472
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 334 PVPEPMAPRKSASTDRAPMHSPPNA 408
P P P P+ +AS A M SPP+A
Sbjct: 288 PTPTPPRPQGTASNTTAAMPSPPSA 312
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,358,967
Number of Sequences: 37544
Number of extensions: 409902
Number of successful extensions: 1650
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1642
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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