Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12f16
(675 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK022027-1|BAB13955.1| 234|Homo sapiens protein ( Homo sapiens ... 268 2e-71
AK001440-1|BAA91692.1| 234|Homo sapiens protein ( Homo sapiens ... 268 2e-71
AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2 prot... 268 2e-71
AL831940-1|CAD38592.1| 215|Homo sapiens hypothetical protein pr... 266 5e-71
AK075148-1|BAC11434.1| 170|Homo sapiens protein ( Homo sapiens ... 266 5e-71
AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens ... 266 5e-71
AK074907-1|BAC11283.1| 170|Homo sapiens protein ( Homo sapiens ... 266 5e-71
AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1 prot... 266 5e-71
AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein. 266 5e-71
AK022640-1|BAB14148.1| 437|Homo sapiens protein ( Homo sapiens ... 153 7e-37
BC026179-1|AAH26179.1| 418|Homo sapiens SEC61A2 protein protein. 151 3e-36
AK096512-1|BAC04807.1| 123|Homo sapiens protein ( Homo sapiens ... 33 0.93
AK125672-1|BAC86239.1| 203|Homo sapiens protein ( Homo sapiens ... 31 3.7
BC103897-1|AAI03898.1| 225|Homo sapiens CHST13 protein protein. 30 8.6
BC103896-1|AAI03897.1| 225|Homo sapiens CHST13 protein protein. 30 8.6
BC103895-1|AAI03896.1| 341|Homo sapiens carbohydrate (chondroit... 30 8.6
BC011138-1|AAH11138.1| 206|Homo sapiens PIP5K1C protein protein. 30 8.6
AY120869-1|AAM55481.1| 341|Homo sapiens chondroitin-4-O-sulfotr... 30 8.6
AK092432-1|BAC03889.1| 131|Homo sapiens protein ( Homo sapiens ... 30 8.6
>AK022027-1|BAB13955.1| 234|Homo sapiens protein ( Homo sapiens
cDNA FLJ11965 fis, clone HEMBB1001112, moderately
similar to Homo sapiens sec61 homolog mRNA. ).
Length = 234
Score = 268 bits (656), Expect = 2e-71
Identities = 124/143 (86%), Positives = 133/143 (93%)
Frame = -2
Query: 671 RAAPVGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQ 492
R+ PVGGLCYYLSPPES+ I DPVH ++Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQ
Sbjct: 92 RSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQ 151
Query: 491 LKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 312
LKEQQMVMRGHRD SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI
Sbjct: 152 LKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 211
Query: 311 IYQYFEIFVKEQAEMGGMSTLLF 243
IYQYFEIFVKEQAE+GGM L F
Sbjct: 212 IYQYFEIFVKEQAEVGGMGALFF 234
>AK001440-1|BAA91692.1| 234|Homo sapiens protein ( Homo sapiens
cDNA FLJ10578 fis, clone NT2RP2003433, highly similar to
PROTEIN TRANSPORT PROTEIN SEC61 ALPHA SUBUNIT. ).
Length = 234
Score = 268 bits (656), Expect = 2e-71
Identities = 124/143 (86%), Positives = 133/143 (93%)
Frame = -2
Query: 671 RAAPVGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQ 492
R+ PVGGLCYYLSPPES+ I DPVH ++Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQ
Sbjct: 92 RSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQ 151
Query: 491 LKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 312
LKEQQMVMRGHRD SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI
Sbjct: 152 LKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 211
Query: 311 IYQYFEIFVKEQAEMGGMSTLLF 243
IYQYFEIFVKEQAE+GGM L F
Sbjct: 212 IYQYFEIFVKEQAEVGGMGALFF 234
>AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2
protein.
Length = 476
Score = 268 bits (656), Expect = 2e-71
Identities = 124/143 (86%), Positives = 133/143 (93%)
Frame = -2
Query: 671 RAAPVGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQ 492
R+ PVGGLCYYLSPPES+ I DPVH ++Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQ
Sbjct: 334 RSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQ 393
Query: 491 LKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 312
LKEQQMVMRGHRD SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI
Sbjct: 394 LKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 453
Query: 311 IYQYFEIFVKEQAEMGGMSTLLF 243
IYQYFEIFVKEQAE+GGM L F
Sbjct: 454 IYQYFEIFVKEQAEVGGMGALFF 476
>AL831940-1|CAD38592.1| 215|Homo sapiens hypothetical protein
protein.
Length = 215
Score = 266 bits (652), Expect = 5e-71
Identities = 123/143 (86%), Positives = 133/143 (93%)
Frame = -2
Query: 671 RAAPVGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQ 492
RA PVGGLCYYLSPPES + DPVHA++Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQ
Sbjct: 73 RAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQ 132
Query: 491 LKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 312
LKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI
Sbjct: 133 LKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 192
Query: 311 IYQYFEIFVKEQAEMGGMSTLLF 243
IYQYFEIFVKEQ+E+G M LLF
Sbjct: 193 IYQYFEIFVKEQSEVGSMGALLF 215
>AK075148-1|BAC11434.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ90667 fis, clone PLACE1005410, highly similar to
Protein transport protein Sec61 alpha subunitisoform 1.
).
Length = 170
Score = 266 bits (652), Expect = 5e-71
Identities = 123/143 (86%), Positives = 133/143 (93%)
Frame = -2
Query: 671 RAAPVGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQ 492
RA PVGGLCYYLSPPES + DPVHA++Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQ
Sbjct: 28 RAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQ 87
Query: 491 LKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 312
LKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI
Sbjct: 88 LKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 147
Query: 311 IYQYFEIFVKEQAEMGGMSTLLF 243
IYQYFEIFVKEQ+E+G M LLF
Sbjct: 148 IYQYFEIFVKEQSEVGSMGALLF 170
>AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens
cDNA FLJ90447 fis, clone NT2RP3001240, highly similar to
Canis familiaris sec61 homologue mRNA. ).
Length = 356
Score = 266 bits (652), Expect = 5e-71
Identities = 123/143 (86%), Positives = 133/143 (93%)
Frame = -2
Query: 671 RAAPVGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQ 492
RA PVGGLCYYLSPPES + DPVHA++Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQ
Sbjct: 214 RAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQ 273
Query: 491 LKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 312
LKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI
Sbjct: 274 LKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 333
Query: 311 IYQYFEIFVKEQAEMGGMSTLLF 243
IYQYFEIFVKEQ+E+G M LLF
Sbjct: 334 IYQYFEIFVKEQSEVGSMGALLF 356
>AK074907-1|BAC11283.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ90426 fis, clone NT2RP3000460, highly similar to
Protein transport protein Sec61 alpha subunitisoform 1.
).
Length = 170
Score = 266 bits (652), Expect = 5e-71
Identities = 123/143 (86%), Positives = 133/143 (93%)
Frame = -2
Query: 671 RAAPVGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQ 492
RA PVGGLCYYLSPPES + DPVHA++Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQ
Sbjct: 28 RAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQ 87
Query: 491 LKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 312
LKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI
Sbjct: 88 LKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 147
Query: 311 IYQYFEIFVKEQAEMGGMSTLLF 243
IYQYFEIFVKEQ+E+G M LLF
Sbjct: 148 IYQYFEIFVKEQSEVGSMGALLF 170
>AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1
protein.
Length = 476
Score = 266 bits (652), Expect = 5e-71
Identities = 123/143 (86%), Positives = 133/143 (93%)
Frame = -2
Query: 671 RAAPVGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQ 492
RA PVGGLCYYLSPPES + DPVHA++Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQ
Sbjct: 334 RAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQ 393
Query: 491 LKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 312
LKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI
Sbjct: 394 LKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 453
Query: 311 IYQYFEIFVKEQAEMGGMSTLLF 243
IYQYFEIFVKEQ+E+G M LLF
Sbjct: 454 IYQYFEIFVKEQSEVGSMGALLF 476
>AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein.
Length = 476
Score = 266 bits (652), Expect = 5e-71
Identities = 123/143 (86%), Positives = 133/143 (93%)
Frame = -2
Query: 671 RAAPVGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQ 492
RA PVGGLCYYLSPPES + DPVHA++Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQ
Sbjct: 334 RAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQ 393
Query: 491 LKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 312
LKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI
Sbjct: 394 LKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 453
Query: 311 IYQYFEIFVKEQAEMGGMSTLLF 243
IYQYFEIFVKEQ+E+G M LLF
Sbjct: 454 IYQYFEIFVKEQSEVGSMGALLF 476
>AK022640-1|BAB14148.1| 437|Homo sapiens protein ( Homo sapiens
cDNA FLJ12578 fis, clone NT2RM4001054, moderately
similar to Homo sapiens sec61 homolog mRNA. ).
Length = 437
Score = 153 bits (370), Expect = 7e-37
Identities = 67/82 (81%), Positives = 75/82 (91%)
Frame = -2
Query: 671 RAAPVGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQ 492
R+ PVGGLCYYLSPPES+ I DPVH ++Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQ
Sbjct: 334 RSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQ 393
Query: 491 LKEQQMVMRGHRDNSMIHELNR 426
LKEQQMVMRGHRD SM+HELNR
Sbjct: 394 LKEQQMVMRGHRDTSMVHELNR 415
>BC026179-1|AAH26179.1| 418|Homo sapiens SEC61A2 protein protein.
Length = 418
Score = 151 bits (365), Expect = 3e-36
Identities = 66/81 (81%), Positives = 74/81 (91%)
Frame = -2
Query: 671 RAAPVGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQ 492
R+ PVGGLCYYLSPPES+ I DPVH ++Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQ
Sbjct: 334 RSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQ 393
Query: 491 LKEQQMVMRGHRDNSMIHELN 429
LKEQQMVMRGHRD SM+HELN
Sbjct: 394 LKEQQMVMRGHRDTSMVHELN 414
>AK096512-1|BAC04807.1| 123|Homo sapiens protein ( Homo sapiens
cDNA FLJ39193 fis, clone OCBBF2004866. ).
Length = 123
Score = 33.1 bits (72), Expect = 0.93
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 250 SVLMPPISACSLTKISKYW*MMVT----ASSIPVPEPMAPRKSASTDRAPMHSPPNA 408
S+ +PP+ + K+ W + + S P+P P+ ++S + R +H PP A
Sbjct: 16 SLCLPPLESGEAWKVPAAWVLQMAPAKATSHSPLPSPVTQQQSRGSSREALHVPPKA 72
>AK125672-1|BAC86239.1| 203|Homo sapiens protein ( Homo sapiens
cDNA FLJ43684 fis, clone TBAES2001492. ).
Length = 203
Score = 31.1 bits (67), Expect = 3.7
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +2
Query: 341 RSRWPRGSRPALTEPRCTVLRT---RPPSGCSGS 433
RS WP GSRP + P T T P S CSGS
Sbjct: 26 RSWWPLGSRPLASVPSTTWAPTPSASPSSSCSGS 59
>BC103897-1|AAI03898.1| 225|Homo sapiens CHST13 protein protein.
Length = 225
Score = 29.9 bits (64), Expect = 8.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 638 LSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKD 504
L PE L H+ D H LLY +C + + + +SG + D
Sbjct: 90 LLQPEDLRHVLVDDAHGLLYCYVPKVACTNWKRVLLALSGQARGD 134
>BC103896-1|AAI03897.1| 225|Homo sapiens CHST13 protein protein.
Length = 225
Score = 29.9 bits (64), Expect = 8.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 638 LSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKD 504
L PE L H+ D H LLY +C + + + +SG + D
Sbjct: 90 LLQPEDLRHVLVDDAHGLLYCYVPKVACTNWKRVLLALSGQARGD 134
>BC103895-1|AAI03896.1| 341|Homo sapiens carbohydrate (chondroitin
4) sulfotransferase 13 protein.
Length = 341
Score = 29.9 bits (64), Expect = 8.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 638 LSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKD 504
L PE L H+ D H LLY +C + + + +SG + D
Sbjct: 90 LLQPEDLRHVLVDDAHGLLYCYVPKVACTNWKRVLLALSGQARGD 134
>BC011138-1|AAH11138.1| 206|Homo sapiens PIP5K1C protein protein.
Length = 206
Score = 29.9 bits (64), Expect = 8.6
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -1
Query: 477 DGDARSPRQLHDPRTEPLHPDGGRVRRTVHRGSVSAGRLPRG 352
D RSP + H PR +PLH R R + G + P G
Sbjct: 31 DPSPRSPARTHTPREQPLHSAQERGRPSSGTGQPRGSQHPSG 72
>AY120869-1|AAM55481.1| 341|Homo sapiens
chondroitin-4-O-sulfotransferase-3 protein.
Length = 341
Score = 29.9 bits (64), Expect = 8.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 638 LSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKD 504
L PE L H+ D H LLY +C + + + +SG + D
Sbjct: 90 LLQPEDLRHVLVDDAHGLLYCYVPKVACTNWKRVLLALSGQARGD 134
>AK092432-1|BAC03889.1| 131|Homo sapiens protein ( Homo sapiens
cDNA FLJ35113 fis, clone PLACE6007242. ).
Length = 131
Score = 29.9 bits (64), Expect = 8.6
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +2
Query: 314 W*RRAVSQCRSRWPRGSRPALTEPRCTVLRTRPPSGCSGSVRGSWSC 454
W R + Q + P G RP C T PP+GCS GS C
Sbjct: 61 WPERLIVQWQRPRPGGCRPPTHG--CARSSTAPPAGCSSPPAGSPRC 105
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,408,469
Number of Sequences: 237096
Number of extensions: 2100464
Number of successful extensions: 10155
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 9704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10154
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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