Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12f16
         (675 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069569-1|AAL39714.1|  476|Drosophila melanogaster LD29847p pro...   278   6e-75
AE014134-1100|AAF52389.2|  476|Drosophila melanogaster CG9539-PA...   278   6e-75
AB062670-1|BAB78518.1|  476|Drosophila melanogaster DSec61alpha ...   278   6e-75
Y08821-1|CAA70056.1|  479|Drosophila melanogaster ladybird early...    29   7.7  
BT024396-1|ABC86458.1|  114|Drosophila melanogaster IP05150p pro...    29   7.7  
AE014297-3010|AAF55896.1|  479|Drosophila melanogaster CG6545-PA...    29   7.7  

>AY069569-1|AAL39714.1|  476|Drosophila melanogaster LD29847p
           protein.
          Length = 476

 Score =  278 bits (681), Expect = 6e-75
 Identities = 128/143 (89%), Positives = 137/143 (95%)
 Frame = -2

Query: 671 RAAPVGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQ 492
           R+ P+GGLCYYLSPPES+ HI  DP+HALLY++FMLGSCAFFSKTWIDVSGSSAKDVAKQ
Sbjct: 334 RSYPIGGLCYYLSPPESVGHILTDPIHALLYIVFMLGSCAFFSKTWIDVSGSSAKDVAKQ 393

Query: 491 LKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 312
           LKEQ MVMRGHR+NSMIHELNRYIPTAAAFGGLCIGALSV+ADFLGAIGSGTGILLAVTI
Sbjct: 394 LKEQHMVMRGHRENSMIHELNRYIPTAAAFGGLCIGALSVMADFLGAIGSGTGILLAVTI 453

Query: 311 IYQYFEIFVKEQAEMGGMSTLLF 243
           IYQYFEIFVKEQ+EMGGM TLLF
Sbjct: 454 IYQYFEIFVKEQSEMGGMGTLLF 476


>AE014134-1100|AAF52389.2|  476|Drosophila melanogaster CG9539-PA
           protein.
          Length = 476

 Score =  278 bits (681), Expect = 6e-75
 Identities = 128/143 (89%), Positives = 137/143 (95%)
 Frame = -2

Query: 671 RAAPVGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQ 492
           R+ P+GGLCYYLSPPES+ HI  DP+HALLY++FMLGSCAFFSKTWIDVSGSSAKDVAKQ
Sbjct: 334 RSYPIGGLCYYLSPPESVGHILTDPIHALLYIVFMLGSCAFFSKTWIDVSGSSAKDVAKQ 393

Query: 491 LKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 312
           LKEQ MVMRGHR+NSMIHELNRYIPTAAAFGGLCIGALSV+ADFLGAIGSGTGILLAVTI
Sbjct: 394 LKEQHMVMRGHRENSMIHELNRYIPTAAAFGGLCIGALSVMADFLGAIGSGTGILLAVTI 453

Query: 311 IYQYFEIFVKEQAEMGGMSTLLF 243
           IYQYFEIFVKEQ+EMGGM TLLF
Sbjct: 454 IYQYFEIFVKEQSEMGGMGTLLF 476


>AB062670-1|BAB78518.1|  476|Drosophila melanogaster DSec61alpha
           protein.
          Length = 476

 Score =  278 bits (681), Expect = 6e-75
 Identities = 128/143 (89%), Positives = 137/143 (95%)
 Frame = -2

Query: 671 RAAPVGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQ 492
           R+ P+GGLCYYLSPPES+ HI  DP+HALLY++FMLGSCAFFSKTWIDVSGSSAKDVAKQ
Sbjct: 334 RSYPIGGLCYYLSPPESVGHILTDPIHALLYIVFMLGSCAFFSKTWIDVSGSSAKDVAKQ 393

Query: 491 LKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 312
           LKEQ MVMRGHR+NSMIHELNRYIPTAAAFGGLCIGALSV+ADFLGAIGSGTGILLAVTI
Sbjct: 394 LKEQHMVMRGHRENSMIHELNRYIPTAAAFGGLCIGALSVMADFLGAIGSGTGILLAVTI 453

Query: 311 IYQYFEIFVKEQAEMGGMSTLLF 243
           IYQYFEIFVKEQ+EMGGM TLLF
Sbjct: 454 IYQYFEIFVKEQSEMGGMGTLLF 476


>Y08821-1|CAA70056.1|  479|Drosophila melanogaster ladybird early
           homeodomain transcriptionfactor protein.
          Length = 479

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -1

Query: 450 LHDPRTEPLHPDGGRVR-RT----VHRGSVSAGRLPRGHRLRHWD 331
           L  P + P+ P GG ++ RT    VH  + +A  LP G  +R WD
Sbjct: 160 LAPPASRPIAPSGGLLQPRTEPLDVHPAAAAAMLLPSGQIVRPWD 204


>BT024396-1|ABC86458.1|  114|Drosophila melanogaster IP05150p
           protein.
          Length = 114

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -1

Query: 462 SPRQLHDPRTEPLHPDGGRVRRTVH-RGSVSAGRLPRGH-RLRHWDTARRHHHLPVLRDL 289
           SP  +     + LH    +  +++H +G  +AG +  GH ++RH     R   LP+ R L
Sbjct: 19  SPTWIRAHLCDALHNRVPQEAQSLHEQGPGTAGHVQPGHLQVRH----SRRCWLPIERRL 74

Query: 288 CQGTSGDG 265
           CQ  +G G
Sbjct: 75  CQAANGPG 82


>AE014297-3010|AAF55896.1|  479|Drosophila melanogaster CG6545-PA
           protein.
          Length = 479

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -1

Query: 450 LHDPRTEPLHPDGGRVR-RT----VHRGSVSAGRLPRGHRLRHWD 331
           L  P + P+ P GG ++ RT    VH  + +A  LP G  +R WD
Sbjct: 160 LAPPASRPIAPSGGLLQPRTEPLDVHPAAAAAMLLPSGQIVRPWD 204


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,947,477
Number of Sequences: 53049
Number of extensions: 652156
Number of successful extensions: 2522
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2521
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)