Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12f16
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-10|CAB16516.1|  473|Caenorhabditis elegans Hypothetical p...   267   4e-72
U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AL021466-1|CAA16282.1|  308|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z81573-3|CAB04624.3|  398|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z81489-4|CAB04010.1|  361|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    28   5.3  
Z73102-12|CAA97406.1|  430|Caenorhabditis elegans Hypothetical p...    28   7.0  
Z69664-4|CAA93517.1|  483|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AL032658-3|CAA21745.1|  152|Caenorhabditis elegans Hypothetical ...    28   7.0  
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U42832-6|AAP40542.2|  342|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U42832-5|ABA03119.1|  468|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U40413-4|AAM51516.1|  699|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U40413-3|AAK39176.1|  673|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL117204-12|CAB55127.1|  385|Caenorhabditis elegans Hypothetical...    27   9.2  

>Z99281-10|CAB16516.1|  473|Caenorhabditis elegans Hypothetical
           protein Y57G11C.15 protein.
          Length = 473

 Score =  267 bits (655), Expect = 4e-72
 Identities = 122/143 (85%), Positives = 132/143 (92%)
 Frame = -2

Query: 671 RAAPVGGLCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQ 492
           R+ P GGLCYYLSPPESL HI  DP+H ++Y++FMLGSCAFFSKTWIDVSGSSAKDVAKQ
Sbjct: 331 RSYPTGGLCYYLSPPESLGHIFEDPIHCIIYIVFMLGSCAFFSKTWIDVSGSSAKDVAKQ 390

Query: 491 LKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTI 312
           LKEQQMVMRGHR+ SMIHELNRYIPTAAAFGGLCIGALSV ADF+GAIGSGTGILLAVTI
Sbjct: 391 LKEQQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVTADFMGAIGSGTGILLAVTI 450

Query: 311 IYQYFEIFVKEQAEMGGMSTLLF 243
           IYQYFEIFVKEQ EMGG+S + F
Sbjct: 451 IYQYFEIFVKEQQEMGGVSAMFF 473


>U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical
           protein F01E11.5a protein.
          Length = 462

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/37 (35%), Positives = 26/37 (70%)
 Frame = -2

Query: 512 AKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAF 402
           AK  A+Q+  Q+ V+R H +++++HE++  +PT+  F
Sbjct: 213 AKHRARQIYRQK-VIRKHIESTILHEISHVLPTSDEF 248


>AL021466-1|CAA16282.1|  308|Caenorhabditis elegans Hypothetical
           protein VF36H2L.1 protein.
          Length = 308

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
 Frame = -2

Query: 647 CYYLSPPESLA----HIAHDPVHALLYVL---FMLGSCAFFSKTWIDVS 522
           CY  S   S+A     IAHDPV  +L+ L   F L S  F S  W+ +S
Sbjct: 9   CYIASFSPSIALFCSFIAHDPVRIILFFLGSFFWLVSLLFSSLAWLGLS 57


>Z81573-3|CAB04624.3|  398|Caenorhabditis elegans Hypothetical
           protein M02G9.2 protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 481 CSFSCFATSLAEEPDTSIQVFEKKAQEPSMKST*SRACTGSCA 609
           CSF C  T L        Q+F+ K  E + +++ S AC   CA
Sbjct: 192 CSFVC--TKLRPTLKVITQMFDSKTDETTCRTSCSSACLSVCA 232


>Z81489-4|CAB04010.1|  361|Caenorhabditis elegans Hypothetical
           protein C55A1.5 protein.
          Length = 361

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 398 GLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIF 288
           GL I  + VL  F  +I + T  +LAV  +Y+Y+ IF
Sbjct: 96  GLKIEIVQVLMAFYTSIYASTICMLAVQFVYRYWAIF 132


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
            F18C12.2b protein.
          Length = 2271

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 496  FATSLAEEPDTSIQVFEKKAQEPSM 570
            FA SL + P+T++Q+F+  ++ P +
Sbjct: 1931 FADSLRDSPNTALQMFDSSSENPEL 1955


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
            F18C12.2a protein.
          Length = 2279

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 496  FATSLAEEPDTSIQVFEKKAQEPSM 570
            FA SL + P+T++Q+F+  ++ P +
Sbjct: 1939 FADSLRDSPNTALQMFDSSSENPEL 1963


>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
           protein F54D11.2 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 322 ASSIPVPEPMAPRKSASTDRAPMHSPP 402
           A+  P PEP+ P K    + AP  S P
Sbjct: 206 AAETPAPEPLVPEKKPKIEDAPTTSSP 232


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
            protein RME-8 protein.
          Length = 2279

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 496  FATSLAEEPDTSIQVFEKKAQEPSM 570
            FA SL + P+T++Q+F+  ++ P +
Sbjct: 1939 FADSLRDSPNTALQMFDSSSENPEL 1963


>Z73102-12|CAA97406.1|  430|Caenorhabditis elegans Hypothetical
           protein B0035.11 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 489 EGTADGDAR-SPRQLHDPRTEPLHPDGG 409
           E   D D+R +PRQL D   + +HP GG
Sbjct: 46  ESDDDDDSRPAPRQLSDSSDDNIHPRGG 73


>Z69664-4|CAA93517.1|  483|Caenorhabditis elegans Hypothetical
           protein K04D7.3 protein.
          Length = 483

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 276 LFLDKDLEVLVNDGDGEQYPSAGADGPEEVGQH*QSPDAQSSE-RGRRRDVAVQF 437
           L L+K +EV+  DG  EQ    GA+  + +G+   S   +  + RGR    AV F
Sbjct: 374 LLLEKAVEVIKRDGLIEQSREVGAEFQKRLGELQASSGGKLDQARGRGTFAAVDF 428


>AL032658-3|CAA21745.1|  152|Caenorhabditis elegans Hypothetical
           protein Y76A2B.4 protein.
          Length = 152

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 253 VLMPPISACSLTKISKYW*MMVTASSIPVPEPMAPRKSASTDRAPMHSPP 402
           +L+P ++ C  + I+  + + +T  SI +    +P  S +T    +HSPP
Sbjct: 88  ILIPTLAVCITSAIATAYILQLT-QSIYLRLSQSPHSSPNTSYPRIHSPP 136


>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical protein
            D2085.1 protein.
          Length = 2198

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +1

Query: 334  PVPEPMAPRKSASTDRAPMHSPPNA 408
            P+P+ M   +S+S +++P+H+PP A
Sbjct: 1842 PIPQQMI--ESSSDEQSPLHTPPRA 1864


>U42832-6|AAP40542.2|  342|Caenorhabditis elegans Hypothetical
           protein F01E11.5b protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 5/42 (11%)
 Frame = -2

Query: 512 AKDVAKQLKEQQM-----VMRGHRDNSMIHELNRYIPTAAAF 402
           AK  A+Q+  Q++     V+R H +++++HE++  +PT+  F
Sbjct: 87  AKHRARQIYRQKLAVSSHVIRKHIESTILHEISHVLPTSDEF 128


>U42832-5|ABA03119.1|  468|Caenorhabditis elegans Hypothetical
           protein F01E11.5c protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 5/42 (11%)
 Frame = -2

Query: 512 AKDVAKQLKEQQM-----VMRGHRDNSMIHELNRYIPTAAAF 402
           AK  A+Q+  Q++     V+R H +++++HE++  +PT+  F
Sbjct: 213 AKHRARQIYRQKLAVSSHVIRKHIESTILHEISHVLPTSDEF 254


>U40413-4|AAM51516.1|  699|Caenorhabditis elegans Hypothetical
           protein C18B2.5b protein.
          Length = 699

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 378 VSAGRLPRGHRLRHWDTARRHHHLP 304
           +  G  P+G+ +R +     HHHLP
Sbjct: 364 IGQGAKPQGYHVRSYSHEHDHHHLP 388


>U40413-3|AAK39176.1|  673|Caenorhabditis elegans Hypothetical
           protein C18B2.5a protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 378 VSAGRLPRGHRLRHWDTARRHHHLP 304
           +  G  P+G+ +R +     HHHLP
Sbjct: 338 IGQGAKPQGYHVRSYSHEHDHHHLP 362


>AL117204-12|CAB55127.1|  385|Caenorhabditis elegans Hypothetical
           protein Y116A8C.21 protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
 Frame = +3

Query: 168 RFRAETTIKTELNAAVRLP-------LSLRDLEEQCAHAAHLRLFLDKDLEVLVNDGDGE 326
           +F     I  +LN+ VR+        L+  +  E C H       LD+ LE+  N+GD  
Sbjct: 32  KFNVNPLINMDLNSCVRIVSDFSTVILASWNSSENC-HLFGFDQILDQILEIKTNEGDMG 90

Query: 327 QYPSAGADGP 356
           QY    +D P
Sbjct: 91  QYLILKSDQP 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,035,547
Number of Sequences: 27780
Number of extensions: 301173
Number of successful extensions: 1021
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)