Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12f16
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.50 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 11/53 (20%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = -2

Query: 629 PESLAHIAHDPVHALLYVLFML--GSCAFFSKTWIDVSGSSAKDVAKQLKEQQ 477
           P+ + H+A   ++  L++   +  G+C+   + + +V+ +  KD+ K++ E++
Sbjct: 393 PDEVQHLARRFLNNYLFLAVGIVGGACSDVEQNFYEVARNKKKDLLKEILERE 445


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 474 GDARSPRQLHDPRTEPLHP 418
           G A SP  +HD RT   HP
Sbjct: 377 GMALSPVDIHDDRTLFFHP 395


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 493  CFATSLAEEPDTSIQVFEKKAQEPSM 570
            C  + +   P+T +   EK  Q+P M
Sbjct: 1242 CIGSQIMVSPETLLSYDEKMDQKPKM 1267


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 487 FSCFATSLAEEPDTSIQVFEKKAQE 561
           F+C AT+     DTSI +  ++  E
Sbjct: 853 FTCVATNAFGSDDTSINMIVQEVPE 877


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 333 DTARRHHHLPVLRDLCQGTSGDGRH 259
           +T +RHHHL       Q T+    H
Sbjct: 136 ETLQRHHHLQNHHHHLQSTAVQDHH 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,015
Number of Sequences: 438
Number of extensions: 4030
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)