Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12f11
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar...    33   0.034
SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces pomb...    31   0.18 
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    29   0.72 
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb...    28   1.3  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    27   2.9  
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.7  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    25   8.9  

>SPAC4A8.13c |pts1||20S proteasome component beta
           5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 33.5 bits (73), Expect = 0.034
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -3

Query: 755 QEVLEVMRSEDEDKVDQCLLKKQNQTTALAEKSLHQMVVCGYALIGHDPV---QAVRSVI 585
           Q  L +    DE K   CL+K  + TT LA +  H +VVC  +     P+   Q V+ VI
Sbjct: 37  QSSLYLRNLTDETKNKHCLIKMNHGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVI 96

Query: 584 SI 579
            I
Sbjct: 97  EI 98


>SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 123

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
 Frame = -3

Query: 167 DNNKDTTKEEDMKTIIRRMLKETKKDLND-DYKSKAMN----LQKDLSSINENVI 18
           D NKD + +E M    ++ +K+T KD  D DY+ KA +    ++++ S  +ENV+
Sbjct: 53  DENKDKSPQE-MAENAKQSVKQTAKDAKDTDYQQKAKDAGKKIKEEFSQRSENVL 106


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = -3

Query: 191 EDTERLDKDNNKDTTKEEDMKTIIRRMLK---ETKKDLNDDYKSKAMNL---QKDLSSIN 30
           +DT   +KDNN  T+K +     + +  +   ETKK  N D+ + +  L    + + SIN
Sbjct: 294 QDTGESNKDNNTSTSKHKKRPKRLSKFKQAKLETKKSGNKDHATSSEKLSLGNESIHSIN 353

Query: 29  E 27
           E
Sbjct: 354 E 354


>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 298

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 224 LDDKKSNNKYIEDTERLDK--DNNKDTTKEEDMKTIIRRMLKETKKDLNDD 78
           +  K+ N+  +   E   K  ++ KDTT EE  +    +   + KKDL+ D
Sbjct: 13  ISSKQENSSEVPKAEEAGKVVESQKDTTSEEKKEETTEKKEDDGKKDLSFD 63


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = -3

Query: 650 QMVVCGYALIGHDPVQAVRSVISIKNMIRHGIKPIYEHKKEVYSLL--KVCGHD 495
           ++V+CG   +G   +  VR++++ + +    +K  Y H KE+ + +  K+C +D
Sbjct: 740 RIVLCG---MGGPIITTVRALLTPQPLKEMRVKSAYVHHKEIKAAMGVKICAND 790



 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 743 EVMRSEDEDKVDQCLLKKQNQTTALAEKSLHQMVVCGYALIG 618
           E  + E+     + L KKQ +  ALA++ L QM+  G  + G
Sbjct: 300 ERKKKEEMKAQGKYLSKKQKEQQALAQRRLQQMLESGVRVAG 341


>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/59 (25%), Positives = 33/59 (55%)
 Frame = -3

Query: 221 DDKKSNNKYIEDTERLDKDNNKDTTKEEDMKTIIRRMLKETKKDLNDDYKSKAMNLQKD 45
           +D+K    + + T++L + N+ +TTK        R++L + K+  N +++S  +  +KD
Sbjct: 31  EDEKRKISHQKYTDKLLEANDNETTK--------RKLLVKQKRKSNKEFQSNIIKKRKD 81


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -3

Query: 548 IYEHKKEVYSLLKVCGHDHDTLKKVIKCVISKSPLIKTVMMGITTKLIQGVMELTK 381
           + E K E  +L++ C H  +  +    CV+S   LIK     +    ++ +M++ K
Sbjct: 72  VNELKIEALTLIQSCAHRDEFKQYAQSCVLSFISLIKADNEEVAVFCLKVIMDIFK 127


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 209 SNNKYIEDTERLDKDNNKDTTKEEDMKTIIRRMLKETKKDL 87
           S+NK     E LD+D    T   +   + + R+L+   KDL
Sbjct: 579 SHNKGTTAIEDLDEDKRSKTKGHKTKSSRVHRLLERKGKDL 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,310,317
Number of Sequences: 5004
Number of extensions: 42287
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)