Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12f11
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1325 - 26146775-26147247,26147397-26148579 32 0.43
03_06_0618 - 35132077-35132830,35133690-35135212 31 1.3
05_01_0296 - 2303344-2303395,2303732-2304180,2304287-2304355,230... 30 2.3
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 30 2.3
11_06_0710 - 26492093-26493460 29 3.1
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 29 3.1
07_01_1204 - 11469953-11470618 29 4.0
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562... 29 4.0
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 29 4.0
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 29 5.3
06_03_1180 + 28218386-28218649,28218725-28219202,28219309-282196... 29 5.3
08_01_0626 - 5445676-5446687,5447099-5447430 28 7.1
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008... 28 7.1
04_01_0261 + 3516461-3516629,3517729-3517823,3518724-3518834,351... 28 7.1
03_05_1160 + 30826972-30828375,30828641-30828754,30828901-308290... 28 7.1
05_01_0448 + 3566151-3567380,3567877-3568188,3568318-3568455 28 9.3
04_04_0539 + 26088245-26088556,26088806-26088931,26089300-260896... 28 9.3
01_03_0109 + 12630644-12630731,12630744-12630775,12631136-126312... 28 9.3
>08_02_1325 - 26146775-26147247,26147397-26148579
Length = 551
Score = 32.3 bits (70), Expect = 0.43
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = -3
Query: 215 KKSNNKYIEDTERLDKDNNKDTTKEEDMKTIIRRML--KETKKDLND--DYKSKAMNLQK 48
K +++KY+ED +R N + T + K + +++ K+ K+L+ K+K LQ+
Sbjct: 308 KSNDHKYVEDKDRDRLANERKTKDRIEEKEKVGKVVVSKQECKELDSLGASKNKIDGLQR 367
Query: 47 DLSSINENVISGD 9
L +NE S D
Sbjct: 368 QLGQLNEEFTSDD 380
>03_06_0618 - 35132077-35132830,35133690-35135212
Length = 758
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -3
Query: 656 LHQMVVCGYALIGHDPVQAVR--SVISIKNMIRHGIKPIYEHKKEVYSLLKVC 504
++ ++ G+A +G+DP +R +V NM++ IKP K S+L+VC
Sbjct: 246 VYNAMIAGFARLGNDPCPEIRIEAVTLFSNMLKKRIKP---SKFTFKSVLEVC 295
>05_01_0296 -
2303344-2303395,2303732-2304180,2304287-2304355,
2304539-2306546,2311181-2311425
Length = 940
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = -3
Query: 491 DTLKKVIKCVISKSPLIKTVMMGITTKLIQGVMELTKLMAHGAMHEACL-LEVVRTVEEE 315
+ +KK+ C++SK+P + M + KL+ +ME T + ++ L +E RTVE++
Sbjct: 547 EIIKKLKDCLLSKTPYVN--MTKVAAKLL--LMEYT---SEELLNRVLLFIEENRTVEDQ 599
Query: 314 AFSL 303
+FSL
Sbjct: 600 SFSL 603
>03_05_0432 -
24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 218 DKKSNNKYIEDTERLDKDNNKDTTKEEDMKTIIRRMLKETKK 93
D K K +D ERL K+ + + +D+K+ I +L++T K
Sbjct: 109 DSKKQAKDNQDNERLQKELESLSEENKDLKSRISSLLEQTNK 150
>11_06_0710 - 26492093-26493460
Length = 455
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -3
Query: 212 KSNNKYIEDTERLDKDNNKDTTKEEDMKTIIRRMLKETKKDLNDDYKSKAMNLQKD 45
KS++ +D E+ K +K++ +ED K ++ K D +D KSK + +D
Sbjct: 147 KSSDDDDDDAEKKSKKKSKNSDDDEDDKKKSKKKPKNPDDDEDDKKKSKKKSSDED 202
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = -3
Query: 188 DTERLDKDNNKDTTKEEDMKTIIRRMLKET---KKDLNDDYKSKAMNLQKDLSSINEN 24
D++ D D+ D++ ++KT + L E K+ L +D ++K +L+ ++ + +N
Sbjct: 148 DSDSSDSDDEGDSSDNNNLKTKVEDALSEENGWKQKLVEDREAKEESLEAEIEKLKQN 205
>07_01_1204 - 11469953-11470618
Length = 221
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = -2
Query: 426 GYYYQANSRCHGTDQIDGTRGHA*SLSVRSRQNS*RRGI 310
G +YQ S GT+ I GT G A + SV S Q+S R G+
Sbjct: 40 GAWYQQGSGRAGTEGIGGTLGRASARSVASCQSS-RAGV 77
>04_03_0659 -
18453778-18453903,18453976-18454963,18455496-18456229,
18456292-18456360,18456528-18456605,18456703-18456789,
18456881-18456931,18457021-18457092,18457177-18457304,
18458194-18458275,18458705-18458754,18459043-18459096,
18459586-18459675,18459903-18459983,18460443-18460538,
18460960-18461022,18461313-18461402,18461630-18461698,
18462051-18462291
Length = 1082
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -3
Query: 194 IEDTERLDKDNNKDTTK-EEDMKTIIRRMLKETKKDLNDDYKSKAMNLQK 48
I++ E +K +KDT+K +D R + +TKKD+N YK + L K
Sbjct: 227 IQEMEANEKVKSKDTSKGNKDNGQSGRTISLDTKKDVNLKYKDDRLILGK 276
>01_06_1801 - 39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/59 (25%), Positives = 34/59 (57%)
Frame = -3
Query: 227 ALDDKKSNNKYIEDTERLDKDNNKDTTKEEDMKTIIRRMLKETKKDLNDDYKSKAMNLQ 51
A+ +K + + I+D LDK NN+ ++ + ++++R+ +E K LN + +N++
Sbjct: 997 AISRRKKDKERIQDL--LDKLNNESHKHQQHIASVLQRLGREKVKWLNSSPDALKINME 1053
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = -3
Query: 218 DKKSNNKYIEDTERLDKDNNKDTTKEEDMKTIIRRMLKETKKDLNDDYKSKAMNLQKDLS 39
D++ + KY ++ ERL K+ K+ E K R+ KE +KD + K + M Q+D S
Sbjct: 478 DREKDIKY-KEVERLYKERLKEWEFREREKEYQRQHEKEREKDRERERKREIMK-QEDDS 535
Query: 38 SINEN 24
+N
Sbjct: 536 DEEDN 540
>06_03_1180 +
28218386-28218649,28218725-28219202,28219309-28219697,
28219785-28220426,28220466-28221368
Length = 891
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/73 (23%), Positives = 42/73 (57%)
Frame = -3
Query: 221 DDKKSNNKYIEDTERLDKDNNKDTTKEEDMKTIIRRMLKETKKDLNDDYKSKAMNLQKDL 42
D++++++ D+ DN+ D+++ +D KT++ ++ ++L++D +++ DL
Sbjct: 346 DEEENDSSDDSDSSNSSSDNSSDSSESDDSKTLV----IDSDEELDED------DIRIDL 395
Query: 41 SSINENVISGDNS 3
S+I+ I D S
Sbjct: 396 SAIHVTPIRADAS 408
>08_01_0626 - 5445676-5446687,5447099-5447430
Length = 447
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/60 (26%), Positives = 32/60 (53%)
Frame = -3
Query: 224 LDDKKSNNKYIEDTERLDKDNNKDTTKEEDMKTIIRRMLKETKKDLNDDYKSKAMNLQKD 45
+DD + + E+ E + +NN D +EE+M+ L E K D+ ++ + + M+ +D
Sbjct: 221 VDDDEDEGEEDEEIEEDEDENNDDDDEEEEMEE--DEDLDEDKNDVVEEEEDEDMDEGED 278
>06_03_1075 +
27399279-27399376,27399449-27399555,27400791-27400898,
27401763-27401860,27401983-27402033,27402137-27402228,
27402360-27402459,27402765-27402884,27402977-27403045,
27403299-27403345,27403428-27403483,27404760-27404800,
27405155-27405260,27406728-27406860,27406937-27407357
Length = 548
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 504 RSRPRYFEEGHQMRHFQVTFN*DGNDGYYYQANSRCHGTDQIDGTR 367
RS R+ + G+ + + DG+D Y Q+ +G D+ DG R
Sbjct: 488 RSSSRHDDRGYSKHESRSKYR-DGDDDYRRQSGGSRYGRDKCDGER 532
>04_01_0261 +
3516461-3516629,3517729-3517823,3518724-3518834,
3519179-3519213,3519864-3519954,3520124-3520196,
3521127-3521257,3524325-3524720
Length = 366
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/65 (29%), Positives = 36/65 (55%)
Frame = -3
Query: 200 KYIEDTERLDKDNNKDTTKEEDMKTIIRRMLKETKKDLNDDYKSKAMNLQKDLSSINENV 21
KY T++ ++D K ++EDM+ IR L+E K+L + S + + + ++ EN+
Sbjct: 196 KYENLTKKRNEDLAKLKKEKEDMEKEIRG-LRERIKELEEQVISSSSSGKSLTNNAAENI 254
Query: 20 ISGDN 6
+ G N
Sbjct: 255 MEGIN 259
>03_05_1160 +
30826972-30828375,30828641-30828754,30828901-30829032,
30830087-30830224
Length = 595
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 224 LDDKKSNNKYIEDTERLDKDNNKDTTKEEDM 132
LD+K S+ Y E L +NK TTK ++M
Sbjct: 317 LDEKLSDGTYARKDETLIDAHNKSTTKNKEM 347
>05_01_0448 + 3566151-3567380,3567877-3568188,3568318-3568455
Length = 559
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -3
Query: 224 LDDKKSNNKYIEDTERLDKDNNKDTTKEEDMKTIIRRM-LKETKKDLNDDYK 72
++D + K E+ RL DNN + ++ +R+ LK +D +D+YK
Sbjct: 478 MEDLGAGGKDAEELMRLLDDNNDGSLSSDEFALFQKRVELKAKLEDKDDEYK 529
>04_04_0539 +
26088245-26088556,26088806-26088931,26089300-26089614,
26090635-26090763,26091172-26091570
Length = 426
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Frame = -3
Query: 692 KQNQTTALAEKSLHQMVVCGYALIGHDPVQAVRS----VISIK-NMIRHGIKPI--YEHK 534
+++ T+AL L ++ + A+ G V V S V++++ +M ++ + +EHK
Sbjct: 53 REHHTSALVRDELERLGLTARAVAGTGVVADVGSGLPPVVALRADMDALPVQELVEWEHK 112
Query: 533 KEVYSLLKVCGHDHDT 486
+V ++ CGHD T
Sbjct: 113 SKVDGVMHACGHDVHT 128
>01_03_0109 +
12630644-12630731,12630744-12630775,12631136-12631217,
12631357-12631481,12631593-12631772,12632239-12632607
Length = 291
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -3
Query: 215 KKSNNKYIEDTERLDKDNNKDTTKEEDMKTIIRRMLKETKKDLNDD 78
KKS+NKY++ L + + ++ +E D + M+ + K D +D
Sbjct: 249 KKSSNKYLDKVSFLQRADYREFERERDARL---SMMSKRKSDTRED 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,276,691
Number of Sequences: 37544
Number of extensions: 259033
Number of successful extensions: 757
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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