Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12f11
(763 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC117132-1|AAI17133.1| 1306|Homo sapiens kinectin 1 (kinesin rec... 35 0.28
BC112337-1|AAI12338.1| 1306|Homo sapiens kinectin 1 (kinesin rec... 35 0.28
BC030598-1|AAH30598.1| 597|Homo sapiens centrosomal protein 70k... 31 3.4
AF289495-1|AAG35791.1| 554|Homo sapiens p10-binding protein BIT... 31 3.4
AF202146-1|AAG35616.1| 597|Homo sapiens p10-binding protein BIT... 31 3.4
AK023098-1|BAB14403.1| 596|Homo sapiens protein ( Homo sapiens ... 31 4.5
BC032442-1|AAH32442.1| 415|Homo sapiens NF-kappaB activating pr... 30 7.8
BC015354-1|AAH15354.1| 415|Homo sapiens NF-kappaB activating pr... 30 7.8
AY388958-1|AAQ90402.1| 415|Homo sapiens nuclear NF-kappaB activ... 30 7.8
AK026279-1|BAB15428.1| 415|Homo sapiens protein ( Homo sapiens ... 30 7.8
>BC117132-1|AAI17133.1| 1306|Homo sapiens kinectin 1 (kinesin
receptor) protein.
Length = 1306
Score = 35.1 bits (77), Expect = 0.28
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 8/180 (4%)
Frame = -3
Query: 536 KKEVYSLLKVCGH--DHDTLKKVIKCVISKSPLIKTVMMGITTKLIQGVMELTKLMAHGA 363
K EV L + + D ++++ KC+ K +KTV + T LIQ + +L A
Sbjct: 711 KSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRT 770
Query: 362 MHEACLLEV----VRTVEEEAF-SLVAEVKKCVSIXXXXXXXXXXXXXXTALD-DKKSNN 201
+ + EV + ++ +F SLV E+KK + L K
Sbjct: 771 ENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKT 830
Query: 200 KYIEDTERLDKDNNKDTTKEEDMKTIIRRMLKETKKDLNDDYKSKAMNLQKDLSSINENV 21
+ T ++ + N KEE M T ++ +L+E +KDL + K +LQ++ S+ +V
Sbjct: 831 VQLSITSKVQELQNLLKGKEEQMNT-MKAVLEEKEKDLANTGK-WLQDLQEENESLKAHV 888
>BC112337-1|AAI12338.1| 1306|Homo sapiens kinectin 1 (kinesin
receptor) protein.
Length = 1306
Score = 35.1 bits (77), Expect = 0.28
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 8/180 (4%)
Frame = -3
Query: 536 KKEVYSLLKVCGH--DHDTLKKVIKCVISKSPLIKTVMMGITTKLIQGVMELTKLMAHGA 363
K EV L + + D ++++ KC+ K +KTV + T LIQ + +L A
Sbjct: 711 KSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRT 770
Query: 362 MHEACLLEV----VRTVEEEAF-SLVAEVKKCVSIXXXXXXXXXXXXXXTALD-DKKSNN 201
+ + EV + ++ +F SLV E+KK + L K
Sbjct: 771 ENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKT 830
Query: 200 KYIEDTERLDKDNNKDTTKEEDMKTIIRRMLKETKKDLNDDYKSKAMNLQKDLSSINENV 21
+ T ++ + N KEE M T ++ +L+E +KDL + K +LQ++ S+ +V
Sbjct: 831 VQLSITSKVQELQNLLKGKEEQMNT-MKAVLEEKEKDLANTGK-WLQDLQEENESLKAHV 888
>BC030598-1|AAH30598.1| 597|Homo sapiens centrosomal protein 70kDa
protein.
Length = 597
Score = 31.5 bits (68), Expect = 3.4
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 2/151 (1%)
Frame = -3
Query: 761 ELQEVLEVMRSEDEDKVDQCLLKKQNQTTALAEKSLHQMVVCGYALIGHDPVQAVRSVIS 582
+LQE++ ++ED +K D+ K NQ AL ++ Q V+C I H+P R+ +
Sbjct: 315 KLQELINHKKAEDTEKKDE--PSKYNQQQALIDQRYFQ-VLCSINSIIHNP----RAPVI 367
Query: 581 IKNMIRHGIKPIYEHKKEVYSLLKVCGHDHDTLKKVIKCVISKSPLIKTVMMGITTKLIQ 402
I + G++ + L++ CG +H L VI+ + +K + + T +
Sbjct: 368 IYKQTKGGVQNFNK------DLVQDCGFEH--LVPVIEMWADQLTSLKDLYKSLKTLSAE 419
Query: 401 GV--MELTKLMAHGAMHEACLLEVVRTVEEE 315
V + L K + + LL +V T+ EE
Sbjct: 420 LVPWLNLKKQDENEGIKVEDLLFIVDTMLEE 450
>AF289495-1|AAG35791.1| 554|Homo sapiens p10-binding protein BITE
splice variant protein.
Length = 554
Score = 31.5 bits (68), Expect = 3.4
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 2/151 (1%)
Frame = -3
Query: 761 ELQEVLEVMRSEDEDKVDQCLLKKQNQTTALAEKSLHQMVVCGYALIGHDPVQAVRSVIS 582
+LQE++ ++ED +K D+ K NQ AL ++ Q V+C I H+P R+ +
Sbjct: 315 KLQELINHKKAEDTEKKDE--PSKYNQQQALIDQRYFQ-VLCSINSIIHNP----RAPVI 367
Query: 581 IKNMIRHGIKPIYEHKKEVYSLLKVCGHDHDTLKKVIKCVISKSPLIKTVMMGITTKLIQ 402
I + G++ + L++ CG +H L VI+ + +K + + T +
Sbjct: 368 IYKQTKGGVQNFNK------DLVQDCGFEH--LVPVIEMWADQLTSLKDLYKSLKTLSAE 419
Query: 401 GV--MELTKLMAHGAMHEACLLEVVRTVEEE 315
V + L K + + LL +V T+ EE
Sbjct: 420 LVPWLNLKKQDENEGIKVEDLLFIVDTMLEE 450
>AF202146-1|AAG35616.1| 597|Homo sapiens p10-binding protein BITE
protein.
Length = 597
Score = 31.5 bits (68), Expect = 3.4
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 2/151 (1%)
Frame = -3
Query: 761 ELQEVLEVMRSEDEDKVDQCLLKKQNQTTALAEKSLHQMVVCGYALIGHDPVQAVRSVIS 582
+LQE++ ++ED +K D+ K NQ AL ++ Q V+C I H+P R+ +
Sbjct: 315 KLQELINHKKAEDTEKKDE--PSKYNQQQALIDQRYFQ-VLCSINSIIHNP----RAPVI 367
Query: 581 IKNMIRHGIKPIYEHKKEVYSLLKVCGHDHDTLKKVIKCVISKSPLIKTVMMGITTKLIQ 402
I + G++ + L++ CG +H L VI+ + +K + + T +
Sbjct: 368 IYKQTKGGVQNFNK------DLVQDCGFEH--LVPVIEMWADQLTSLKDLYKSLKTLSAE 419
Query: 401 GV--MELTKLMAHGAMHEACLLEVVRTVEEE 315
V + L K + + LL +V T+ EE
Sbjct: 420 LVPWLNLKKQDENEGIKVEDLLFIVDTMLEE 450
>AK023098-1|BAB14403.1| 596|Homo sapiens protein ( Homo sapiens
cDNA FLJ13036 fis, clone NT2RP3001253, weakly similar to
NUF1 PROTEIN. ).
Length = 596
Score = 31.1 bits (67), Expect = 4.5
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 2/151 (1%)
Frame = -3
Query: 761 ELQEVLEVMRSEDEDKVDQCLLKKQNQTTALAEKSLHQMVVCGYALIGHDPVQAVRSVIS 582
+LQE++ ++ED +K D+ K NQ AL ++ Q V+C I H+P R+ +
Sbjct: 314 KLQELINHKKAEDTEKKDE--PSKYNQQQALIDQRYFQ-VLCSINSIIHNP----RAPVI 366
Query: 581 IKNMIRHGIKPIYEHKKEVYSLLKVCGHDHDTLKKVIKCVISKSPLIKTVMMGITTKLIQ 402
I + G++ + L++ CG +H L VI+ + +K + + T +
Sbjct: 367 IYKRTKGGVQNFNK------DLVQDCGFEH--LVPVIEMWADQLTSLKDLYKSLKTLSAE 418
Query: 401 GV--MELTKLMAHGAMHEACLLEVVRTVEEE 315
V + L K + + LL +V T+ EE
Sbjct: 419 LVPWLNLKKQDENEGIKVEDLLFIVDTMLEE 449
>BC032442-1|AAH32442.1| 415|Homo sapiens NF-kappaB activating
protein protein.
Length = 415
Score = 30.3 bits (65), Expect = 7.8
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -3
Query: 215 KKSNNKYIEDTERLDKDNNKDTTKEEDMKTIIRRMLKETKKDLNDDYKSKAMNLQKDLSS 36
K+ + KY ED++ D D+ D++ +ED K RR K KK+ ++SK ++ S
Sbjct: 203 KRKHKKYSEDSDS-DSDSETDSS-DEDNK---RRAKKAKKKEKKKKHRSKKYKKKRSKKS 257
Query: 35 INEN 24
E+
Sbjct: 258 RKES 261
>BC015354-1|AAH15354.1| 415|Homo sapiens NF-kappaB activating
protein protein.
Length = 415
Score = 30.3 bits (65), Expect = 7.8
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -3
Query: 215 KKSNNKYIEDTERLDKDNNKDTTKEEDMKTIIRRMLKETKKDLNDDYKSKAMNLQKDLSS 36
K+ + KY ED++ D D+ D++ +ED K RR K KK+ ++SK ++ S
Sbjct: 203 KRKHKKYSEDSDS-DSDSETDSS-DEDNK---RRAKKAKKKEKKKKHRSKKYKKKRSKKS 257
Query: 35 INEN 24
E+
Sbjct: 258 RKES 261
>AY388958-1|AAQ90402.1| 415|Homo sapiens nuclear NF-kappaB
activating protein protein.
Length = 415
Score = 30.3 bits (65), Expect = 7.8
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -3
Query: 215 KKSNNKYIEDTERLDKDNNKDTTKEEDMKTIIRRMLKETKKDLNDDYKSKAMNLQKDLSS 36
K+ + KY ED++ D D+ D++ +ED K RR K KK+ ++SK ++ S
Sbjct: 203 KRKHKKYSEDSDS-DSDSETDSS-DEDNK---RRAKKAKKKEKKKKHRSKKYKKKRSKKS 257
Query: 35 INEN 24
E+
Sbjct: 258 RKES 261
>AK026279-1|BAB15428.1| 415|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22626 fis, clone HSI06109. ).
Length = 415
Score = 30.3 bits (65), Expect = 7.8
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -3
Query: 215 KKSNNKYIEDTERLDKDNNKDTTKEEDMKTIIRRMLKETKKDLNDDYKSKAMNLQKDLSS 36
K+ + KY ED++ D D+ D++ +ED K RR K KK+ ++SK ++ S
Sbjct: 203 KRKHKKYSEDSDS-DSDSETDSS-DEDNK---RRAKKAKKKEKKKKHRSKKYKKKRSKKS 257
Query: 35 INEN 24
E+
Sbjct: 258 RKES 261
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,949,371
Number of Sequences: 237096
Number of extensions: 1434461
Number of successful extensions: 3672
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3669
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9144232952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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