Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12f09
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    32   0.088
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    26   5.8  

>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 31.9 bits (69), Expect = 0.088
 Identities = 17/44 (38%), Positives = 28/44 (63%)
 Frame = -3

Query: 466 DLVINYFSLNWLEVQYSILCFQPILNCDMIIYNSTTIISFESNV 335
           D ++N FSLN + ++Y  L   P+L+ DM++YN  T  + E +V
Sbjct: 575 DWLLNGFSLNGV-LKYQSLLKPPVLSHDMLVYNLATNPASEISV 617


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 328 FEXLINXSSYELILFTXYNFDGKDVVLTSTLD 233
           F  L       ++    YNFD  D+VL  T D
Sbjct: 539 FPHLSKEQQISILKVVVYNFDSLDIVLRGTFD 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,784
Number of Sequences: 5004
Number of extensions: 41995
Number of successful extensions: 61
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)