Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12f08
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    32   0.087
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    29   0.81 
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    27   2.5  
SPBC1709.09 |||mitochondrial translation termination factor|Schi...    26   4.3  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   7.6  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   10.0 

>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 31.9 bits (69), Expect = 0.087
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = -1

Query: 667 EFYQNISENGRSRHKKILK*SVIVTIFSVHLDMSPYLIMRERKHFGCYEIVLRNLS 500
           +F +  S N   + KK+LK   I+T+  VHL +SP+++ R  + F     +L+  S
Sbjct: 314 QFLKEASLNTLIKDKKMLK--FIITVRPVHLHVSPWVVYRRYRGFKTLYYLLKKQS 367


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 566 TLPDNERKETLRMLRNSFAELVNDLNKLPVKTDTLKMRNKKMEL 435
           T+ +NE  E +RM  ++F E++ D  K  V      +R K  EL
Sbjct: 128 TIVNNESAEIIRMFNDAFNEVIEDEEKRVVDLYPSSLRTKIDEL 171


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -3

Query: 581 PPGHVTLPDNERKETLRMLRNSFAELVNDLNKLPVKTDTLKMRNKKMELEKQ 426
           PP  V L  +  KE L  +R  F++   D+ K  ++T+ L+  NK+ + EK+
Sbjct: 143 PPAIVLLGRHALKEFLYGVRYGFSD---DIMKRKLETEKLEANNKEEKEEKE 191


>SPBC1709.09 |||mitochondrial translation termination
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -3

Query: 557 DNERKETLRMLRNSFAELVNDLNKLPVKTDTLKMRNKKMELEKQLAKLEEGIKVFSRPKV 378
           D + K  L+ + +S    V   NKL   T  +K +   +E  +QLAK+ EG    SR ++
Sbjct: 132 DVDIKNILKAIEDSRYPFV--ANKLNASTIEVKPQRTTLESRQQLAKVLEGYAKDSREQL 189


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +1

Query: 364  PILTKTFGREKTFIPSSNFASCFSNSIFLLRILRVSVLTGNLFKSLTSSAKLFRSIRSVS 543
            P+L K   RE      S   SC  +  +L ++   + +  NL+  L+    L + + SV 
Sbjct: 1603 PLLVKDTFREFAEASVSGLLSCDESFHYLTQLYYTADIVRNLWILLSQRNSLLKCMESVE 1662

Query: 544  F 546
            F
Sbjct: 1663 F 1663


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = -3

Query: 551 ERKETLRMLRNSFAELVNDLNKLPVKTDTLKMRNKKM--ELEKQ---LAKLEEGIKVFSR 387
           +++ET   + N+F    NDL +     + L+ R K++   LEK+   ++ L E + +  +
Sbjct: 577 DKEETYNEVMNAFQYKDNDLRRFHESINKLQDREKELTSNLEKKNLVISSLRETVAMLEK 636

Query: 386 PKVFVK 369
            +  +K
Sbjct: 637 ERESIK 642


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,383,282
Number of Sequences: 5004
Number of extensions: 43224
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)