Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12f08
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0142 + 20167876-20169108                                         33   0.28 
05_06_0189 + 26257587-26257791,26257962-26258003,26258064-262584...    30   1.9  
08_02_0040 - 11526922-11527319,11528229-11528511                       29   2.6  
03_05_0977 + 29355824-29357056                                         29   3.4  
10_08_0915 + 21539651-21540226,21540276-21541139                       29   4.5  
07_01_0873 - 7257016-7257957,7260083-7260262                           29   4.5  
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336...    29   4.5  
09_02_0164 + 5144935-5144942,5145893-5145932,5146245-5146491,514...    28   5.9  
07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083...    28   7.8  
05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,300...    28   7.8  

>02_04_0142 + 20167876-20169108
          Length = 410

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 12/33 (36%), Positives = 25/33 (75%)
 Frame = -3

Query: 497 DLNKLPVKTDTLKMRNKKMELEKQLAKLEEGIK 399
           +L K+ ++ + +K+ N+++ELE +L ++E GIK
Sbjct: 371 ELEKMRLENEKMKLENERLELELKLKEIEMGIK 403


>05_06_0189 +
           26257587-26257791,26257962-26258003,26258064-26258436,
           26258515-26258656,26259356-26259514,26259599-26259661,
           26259992-26260180
          Length = 390

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/69 (26%), Positives = 34/69 (49%)
 Frame = -3

Query: 569 VTLPDNERKETLRMLRNSFAELVNDLNKLPVKTDTLKMRNKKMELEKQLAKLEEGIKVFS 390
           VT  + E++E   M    F +L  +  K  +   +LK   +K+E++K L  ++       
Sbjct: 243 VTPNEEEKEEDKEMTLEEFEKLREEKRKALL---SLKTEERKVEIDKDLKSMQPLSNKKE 299

Query: 389 RPKVFVKIG 363
             +VF+K+G
Sbjct: 300 NDEVFIKLG 308


>08_02_0040 - 11526922-11527319,11528229-11528511
          Length = 226

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/64 (23%), Positives = 33/64 (51%)
 Frame = -3

Query: 581 PPGHVTLPDNERKETLRMLRNSFAELVNDLNKLPVKTDTLKMRNKKMELEKQLAKLEEGI 402
           PP  V  PD  +++ +++   S  +L   + KL  + + +++R++  EL  +LA++    
Sbjct: 142 PPPIVRAPDQYQEDEVKLPEPSIHKLAAQVKKL--RKENIELRDRNAELGVELAEIRNNF 199

Query: 401 KVFS 390
              S
Sbjct: 200 DTLS 203


>03_05_0977 + 29355824-29357056
          Length = 410

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/74 (22%), Positives = 33/74 (44%)
 Frame = -3

Query: 644 ERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLPVKTDT 465
           ERKE++Q+D E     DN+     H   P  E+ E LR  ++    + +    +P     
Sbjct: 144 ERKERSQEDQEKTFHGDNVSSAVSH-DPPSAEQDELLRHAQDKILYVDDASTAVPHDNQE 202

Query: 464 LKMRNKKMELEKQL 423
            + R ++    +++
Sbjct: 203 AERREEEARKAREM 216


>10_08_0915 + 21539651-21540226,21540276-21541139
          Length = 479

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -3

Query: 647 RERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLPVK 474
           RER+E  ++ + ++S  D + CP G        R+  L      FAEL +++N + V+
Sbjct: 332 REREEDRRRMASLLSRGDVVVCPEGTTC-----REPYLLRFSPLFAELADEVNPVAVR 384


>07_01_0873 - 7257016-7257957,7260083-7260262
          Length = 373

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 509 ELVNDLNKLPVKTDTLKMRNKKMELEKQLAKLEEG 405
           E + DL    + +DT K+ NKK+E EK L + E G
Sbjct: 290 ERIADLTPTEMASDTRKLENKKIE-EKALFECERG 323


>01_01_0453 -
           3361460-3361549,3361660-3361846,3362038-3362139,
           3362239-3362306,3362976-3363175,3363253-3363595,
           3363837-3363893,3364011-3364727,3364805-3365007,
           3365171-3365297
          Length = 697

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = -3

Query: 557 DNERKETLRMLRNSFAELVNDLNKLPVKTDTLKMRNKKMELEKQLAKLEEGIKVFSR 387
           D   K+T  +  + +AEL   +N L  KT+  +M   K++ ++++  L++ +KV  R
Sbjct: 333 DTSLKDTSFVQCHEYAELYQIINDLSKKTE--EMEKMKVDSDQEILLLKKLVKVMER 387


>09_02_0164 +
           5144935-5144942,5145893-5145932,5146245-5146491,
           5146512-5146873
          Length = 218

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/59 (27%), Positives = 34/59 (57%)
 Frame = -3

Query: 566 TLPDNERKETLRMLRNSFAELVNDLNKLPVKTDTLKMRNKKMELEKQLAKLEEGIKVFS 390
           T+  NE  + L + R +    +NDLN  P+ T+T     ++ + E+Q+ +++E I +++
Sbjct: 161 TMDINEPSQELEVARGTRMFHINDLNVPPIWTET---PEEEDDPEEQVFEMQEHISMYA 216


>07_03_1584 +
           27907345-27907357,27907693-27908039,27908202-27908319,
           27908653-27908705,27908808-27908978,27909447-27909643,
           27909729-27909807,27909954-27909992,27910202-27910321,
           27910417-27910518,27910654-27910737,27910832-27911074,
           27911156-27911281,27911365-27911439,27911534-27911605,
           27911807-27911926,27912075-27912172,27912643-27912802,
           27912867-27912980,27913029-27913121,27913122-27913319,
           27913404-27913497,27914032-27914192
          Length = 958

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 91  LVRKNS*FILKYPCENDYLKTLNFNK 168
           L+RK+  F +KYPC N+Y  T N ++
Sbjct: 211 LLRKSE-FPIKYPCANEYSLTSNLHE 235


>05_01_0384 +
           2997465-2999777,2999960-3000035,3003027-3003102,
           3003571-3004442,3004592-3004773,3005206-3005295,
           3005388-3005675,3005776-3005997,3006053-3006133,
           3006634-3006861
          Length = 1475

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 638 KEQTQKDSEVVSDSDNIQCPPGH 570
           KE+ + DS  V+  D +QCPP H
Sbjct: 741 KEKVEDDSLGVAHFDVVQCPPDH 763


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,363,536
Number of Sequences: 37544
Number of extensions: 215079
Number of successful extensions: 499
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)