Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12f08
         (676 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    25   2.9  
AF457565-1|AAL68795.1|  391|Anopheles gambiae TRIO protein protein.    24   3.8  
AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    23   6.7  
AY496420-1|AAS80137.1|  447|Anopheles gambiae bacteria responsiv...    23   8.8  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -3

Query: 587 QCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLPVKTD--TLKMRNKKMELEKQLAKL 414
           Q PP ++ +  +E K   +  R      +N+LN    K D    +M  K  + ++ + KL
Sbjct: 697 QKPPRYLQVSMDELKRHTQQRREQLQRELNELNSAYAKEDERLQEMTRKLHQRQQHMKKL 756

Query: 413 EE 408
           ++
Sbjct: 757 QQ 758


>AF457565-1|AAL68795.1|  391|Anopheles gambiae TRIO protein protein.
          Length = 391

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 530 MLRNSFAELVNDLNKLPVKTDTLKMRNKKM 441
           + +NSFA LV+     P   DTL+ R  K+
Sbjct: 252 LYKNSFATLVSIARHFPDHFDTLRQRLFKL 281


>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 575 GHVTLPDNERKETLRMLRNSFAELVNDL 492
           GH T+P+ ++++TL M   +F   + +L
Sbjct: 349 GHATMPEKQQRQTL-MFSATFPAEIQEL 375


>AY496420-1|AAS80137.1|  447|Anopheles gambiae bacteria responsive
           protein 1 protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 438 IRETTGKIRRGYKSFFTTKS 379
           IR  TGK+  G+K  FT  S
Sbjct: 172 IRGWTGKVWHGFKKLFTGDS 191


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 579,425
Number of Sequences: 2352
Number of extensions: 9749
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67741110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)