Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12f08
(676 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000265-4|AAK68198.1| 457|Caenorhabditis elegans Hypothetical ... 31 0.99
AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical ... 30 1.3
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 29 2.3
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 29 2.3
AC006795-2|AAF59493.3| 421|Caenorhabditis elegans Hypothetical ... 29 2.3
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 29 3.0
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 29 3.0
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 29 3.0
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 3.0
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 29 3.0
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 29 3.0
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 29 4.0
AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical... 29 4.0
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 28 7.0
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 28 7.0
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 28 7.0
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 27 9.2
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 27 9.2
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 27 9.2
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 27 9.2
AF125952-7|AAD14695.1| 352|Caenorhabditis elegans Seven tm rece... 27 9.2
AF025464-6|AAB71012.2| 376|Caenorhabditis elegans Hypothetical ... 27 9.2
AC006722-13|AAK68415.2| 352|Caenorhabditis elegans Hypothetical... 27 9.2
>AF000265-4|AAK68198.1| 457|Caenorhabditis elegans Hypothetical
protein C18E3.6 protein.
Length = 457
Score = 30.7 bits (66), Expect = 0.99
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -3
Query: 521 NSFAELVNDLNKLPVKTDTLKMRNKKMELEKQLAKLEEGIKVF 393
+ FA LVNDL+K V K +N+K E + LE + F
Sbjct: 94 DEFATLVNDLSKEIVAFSDFKEKNRKSEFYNHICGLEAAVGGF 136
>AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical
protein Y45G5AM.7 protein.
Length = 433
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Frame = -3
Query: 656 KYLRERKEQTQKDSEVVSDSDNIQCP-PGHVTLPDNERKETLRMLRNSFAELVNDLNK-L 483
++L+ERKE T+K + ++++ + + K+ + + F+ VN N +
Sbjct: 244 QFLKERKESTEKIELIQKEAEDYRKRIEEDIRNRQQRHKKEVDAHQEKFSATVNHQNAVI 303
Query: 482 PVKTDTLKMRNKKM-ELEKQLAKLEEGIK 399
T T+K + ++ EL+ QL K E IK
Sbjct: 304 EELTQTVKQKQSEIAELKDQLEKQESRIK 332
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -3
Query: 620 DSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLP 480
DS+ S+S + P +T+P+ R+E L + S E+ +++LP
Sbjct: 6 DSDSDSESQLDEIPSSGLTIPEERRRELLGQVGESDDEVSESISELP 52
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -3
Query: 620 DSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLP 480
DS+ S+S + P +T+P+ R+E L + S E+ +++LP
Sbjct: 6 DSDSDSESQLDEIPSSGLTIPEERRRELLGQVGESDDEVSESISELP 52
>AC006795-2|AAF59493.3| 421|Caenorhabditis elegans Hypothetical
protein Y50D4B.6 protein.
Length = 421
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 674 KKGVLPKYLRERKEQTQKDSEVVSDSDNIQCP 579
+KG L +YLR R+ KD V D+ + CP
Sbjct: 191 EKGDLVEYLRARRRYFNKDIVCVEDNGRLLCP 222
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 29.1 bits (62), Expect = 3.0
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Frame = -3
Query: 656 KYLRERKE-QTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLP 480
KY ER E Q + + ++ D+D +TL + RM+ + AEL ++L
Sbjct: 375 KYDLERLENQLRSELDLEHDADIDIEIDNAITLKIRGMSDKARMIAKNCAELQSNLRTAQ 434
Query: 479 -----VKTDTLKMRNKKMELEKQLAKLEEGIK 399
++ + ++N+K++LEK++ +L+ IK
Sbjct: 435 EAATKIEVEMKTLQNEKVKLEKEVEQLKFKIK 466
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 449 KKMELEKQLAKLEEGIKVFSRPKVFVKIGE 360
KK E+E Q+ K E K+F R +F K+ E
Sbjct: 928 KKAEMEVQMMKKELDQKIFHRKSLFKKVQE 957
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 29.1 bits (62), Expect = 3.0
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Frame = -3
Query: 656 KYLRERKE-QTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLP 480
KY ER E Q + + ++ D+D +TL + RM+ + AEL ++L
Sbjct: 361 KYDLERLENQLRSELDLEHDADIDIEIDNAITLKIRGMSDKARMIAKNCAELQSNLRTAQ 420
Query: 479 -----VKTDTLKMRNKKMELEKQLAKLEEGIK 399
++ + ++N+K++LEK++ +L+ IK
Sbjct: 421 EAATKIEVEMKTLQNEKVKLEKEVEQLKFKIK 452
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 449 KKMELEKQLAKLEEGIKVFSRPKVFVKIGE 360
KK E+E Q+ K E K+F R +F K+ E
Sbjct: 914 KKAEMEVQMMKKELDQKIFHRKSLFKKVQE 943
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 29.1 bits (62), Expect = 3.0
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Frame = -3
Query: 656 KYLRERKE-QTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLP 480
KY ER E Q + + ++ D+D +TL + RM+ + AEL ++L
Sbjct: 361 KYDLERLENQLRSELDLEHDADIDIEIDNAITLKIRGMSDKARMIAKNCAELQSNLRTAQ 420
Query: 479 -----VKTDTLKMRNKKMELEKQLAKLEEGIK 399
++ + ++N+K++LEK++ +L+ IK
Sbjct: 421 EAATKIEVEMKTLQNEKVKLEKEVEQLKFKIK 452
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 449 KKMELEKQLAKLEEGIKVFSRPKVFVKIGE 360
KK E+E Q+ K E K+F R +F K+ E
Sbjct: 914 KKAEMEVQMMKKELDQKIFHRKSLFKKVQE 943
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
T28C6.9 protein.
Length = 1861
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = -3
Query: 554 NERKETLRMLRN---SFAELVNDLNKLPVKTDTLKMRNKKMELEKQLAKLEEGI 402
N KE + ++ N ++ D +KL TD + ++ +K+ELEK + KLE I
Sbjct: 1366 NSNKELIHVVENLKSQMGQIQQDRDKL--MTDLVTVQAEKLELEKIIQKLEVDI 1417
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -3
Query: 671 KGVLPKYLRERKEQTQKDSE-VVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVND 495
+G L K L E + ++K+ + VS PG LP +E LR +RN+F ND
Sbjct: 487 QGALKK-LHEMAQDSEKNVDGTVSIKRTRSLSPGKTPLPPSE---ALRAVRNTFRNKDND 542
Query: 494 LNKLPVK 474
+ +L K
Sbjct: 543 IQQLERK 549
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -3
Query: 671 KGVLPKYLRERKEQTQKDSE-VVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVND 495
+G L K L E + ++K+ + VS PG LP +E LR +RN+F ND
Sbjct: 560 QGALKK-LHEMAQDSEKNVDGTVSIKRTRSLSPGKTPLPPSE---ALRAVRNTFRNKDND 615
Query: 494 LNKLPVK 474
+ +L K
Sbjct: 616 IQQLERK 622
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -3
Query: 671 KGVLPKYLRERKEQTQKDSE-VVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVND 495
+G L K L E + ++K+ + VS PG LP +E LR +RN+F ND
Sbjct: 560 QGALKK-LHEMAQDSEKNVDGTVSIKRTRSLSPGKTPLPPSE---ALRAVRNTFRNKDND 615
Query: 494 LNKLPVK 474
+ +L K
Sbjct: 616 IQQLERK 622
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = -3
Query: 659 PKYLRERKEQTQKDSEVVSDSDNIQCPPGHV----TLPDNERKETLRMLRNSFAELVNDL 492
PKYL E+ + K + + D PP + LPD+ E L ++ N FA L D+
Sbjct: 104 PKYLSEKILKKPKSRKKENGGDG-PAPPNKILFCTNLPDSATAEMLEIMFNQFAGL-KDI 161
Query: 491 NKLP 480
+P
Sbjct: 162 RMVP 165
>AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical
protein Y26D4A.13 protein.
Length = 758
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/96 (20%), Positives = 44/96 (45%)
Frame = -3
Query: 665 VLPKYLRERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNK 486
++ Y++ R+E K+S+ +D +NI+ V P E + L+ E++++ NK
Sbjct: 16 IVQTYIKNRREHKFKNSQERTDLENIEDHRIDVFKPILESNKKLQ------EEIIDEKNK 69
Query: 485 LPVKTDTLKMRNKKMELEKQLAKLEEGIKVFSRPKV 378
+ + K K++ +E+ + +P V
Sbjct: 70 IVETLNNFKPSYKQLSIEQPKTPSNNKQSLIKKPSV 105
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -3
Query: 644 ERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLP 480
+R + D + S D I P +T+P+ R+E L + S E+ +++LP
Sbjct: 539 KRSSSVRPDPDEESQLDEI--PSSGLTIPEERRRELLGQVGESDDEVSESISELP 591
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -3
Query: 644 ERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLP 480
+R + D + S D I P +T+P+ R+E L + S E+ +++LP
Sbjct: 539 KRSSSVRPDPDEESQLDEI--PSSGLTIPEERRRELLGQVGESDDEVSESISELP 591
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -3
Query: 644 ERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLP 480
+R + D + S D I P +T+P+ R+E L + S E+ +++LP
Sbjct: 539 KRSSSVRPDPDEESQLDEI--PSSGLTIPEERRRELLGQVGESDDEVSESISELP 591
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -3
Query: 644 ERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLP 480
+R + D + S D I P +T+P+ R+E L + S E+ +++LP
Sbjct: 539 KRSSSVRPDPDEESQLDEI--PSSGLTIPEERRRELLGQVGESDDEVSESISELP 591
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = -3
Query: 623 KDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLPVKTDTLKMR--- 453
KD+E S + + + +E +ET R L+ A + DL+ ++ D L+
Sbjct: 474 KDTEERSRFEKERSEREKIRRESDELRETQRSLKGDVAAMKTDLDDKTLRLDMLETERDE 533
Query: 452 -NKKMELEKQLA 420
KK+E E++ A
Sbjct: 534 LKKKLETEREQA 545
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = -3
Query: 623 KDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLPVKTDTLKMR--- 453
KD+E S + + + +E +ET R L+ A + DL+ ++ D L+
Sbjct: 474 KDTEERSRFEKERSEREKIRRESDELRETQRSLKGDVAAMKTDLDDKTLRLDMLETERDE 533
Query: 452 -NKKMELEKQLA 420
KK+E E++ A
Sbjct: 534 LKKKLETEREQA 545
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = -3
Query: 623 KDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLPVKTDTLKMR--- 453
KD+E S + + + +E +ET R L+ A + DL+ ++ D L+
Sbjct: 234 KDTEERSRFEKERSEREKIRRESDELRETQRSLKGDVAAMKTDLDDKTLRLDMLETERDE 293
Query: 452 -NKKMELEKQLA 420
KK+E E++ A
Sbjct: 294 LKKKLETEREQA 305
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = -3
Query: 623 KDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLPVKTDTLKMR--- 453
KD+E S + + + +E +ET R L+ A + DL+ ++ D L+
Sbjct: 474 KDTEERSRFEKERSEREKIRRESDELRETQRSLKGDVAAMKTDLDDKTLRLDMLETERDE 533
Query: 452 -NKKMELEKQLA 420
KK+E E++ A
Sbjct: 534 LKKKLETEREQA 545
>AF125952-7|AAD14695.1| 352|Caenorhabditis elegans Seven tm
receptor protein 258 protein.
Length = 352
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +1
Query: 430 FSNSIFLLRILRVSVLTGNLFKSLTSSAKLFRSIRSVSFLSLSGKVTCP 576
FSNSI + L+ ++ NL TSS K F+SI+ L+L + + P
Sbjct: 215 FSNSIMVFFGLKAYLVMKNLMSQSTSSDK-FKSIQQQLLLALILQTSIP 262
>AF025464-6|AAB71012.2| 376|Caenorhabditis elegans Hypothetical
protein F53G2.2 protein.
Length = 376
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 420 KIRRGYKSFFTTKSFCQNW*IIRQGC 343
K +RGYKSF T F + + +I + C
Sbjct: 242 KYKRGYKSFDTKADFLKGYHVIEEMC 267
>AC006722-13|AAK68415.2| 352|Caenorhabditis elegans Hypothetical
protein Y19D10A.2 protein.
Length = 352
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +1
Query: 430 FSNSIFLLRILRVSVLTGNLFKSLTSSAKLFRSIRSVSFLSLSGKVTCP 576
FSNSI + L+ ++ NL TSS K F+SI+ L+L + + P
Sbjct: 215 FSNSIMVFFGLKAYLVMKNLMSQSTSSDK-FKSIQQQLLLALILQTSIP 262
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,045,920
Number of Sequences: 27780
Number of extensions: 237429
Number of successful extensions: 791
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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