Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12f05
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    24   1.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   4.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.6  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   8.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.0  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   8.0  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 632 EPKCLYFLSFTCYEIQFMFKYNNSYYNWTPFMYCDLQF 519
           EPK +  LS   Y       YNN+Y N+   +Y ++ +
Sbjct: 78  EPKIISSLSNN-YNYSNYNNYNNNYNNYNKKLYYNINY 114


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 259 FLGYSTNGFSPIEFLLF 309
           +LGYS + F+PI + +F
Sbjct: 312 WLGYSNSAFNPIIYSIF 328


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 608 SFTCYEIQFMFKYNNSYY 555
           +FTC E+ F+ K    YY
Sbjct: 230 NFTCLEVVFVLKRRLGYY 247


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 631 NRNACIFFHLLAMKYSSCLNTITV 560
           N +  ++FH LA +  S +NT  +
Sbjct: 258 NNDRILYFHSLASRVESWVNTSVI 281


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 575 KYNNSYYNWTPFMYCDLQF 519
           K N  YYN  P  Y D+ F
Sbjct: 205 KRNEIYYNCCPEPYIDITF 223


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
 Frame = -1

Query: 640 NGTNRNACIFFHLLAMKYSSCLNT------ITVIIIGLHLCTVIFNFERIKSSNLKNSQR 479
           N  NR    +   L+MK    +N       +   I+G ++  +I N     S N  N+Q 
Sbjct: 535 NRMNRQMNEYMMALSMKLQKFINNDYNFNEVNFRILGANVNDLIMNTRCANSDNQNNNQN 594

Query: 478 KN 473
           K+
Sbjct: 595 KH 596


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 556 IIGLHLCTVIFNFERIKSSNLKNSQRK 476
           I+G ++  +I N    KS+N  N+Q K
Sbjct: 403 ILGANVNNLIKNTRCAKSNNQNNNQNK 429


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 138 TKILRNVSEILTDAVIWASLLFGAYILP 55
           T  LRNV+ +   ++  A L+ G  +LP
Sbjct: 93  TSKLRNVTNMFIVSLAVADLMVGLAVLP 120


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 141 RTKILRNVSEILTDAVIWASLLFGAYILPDGINIGIK 31
           RTK L   + +  DA  +     G Y+LP G   G K
Sbjct: 92  RTKTLVKNAIVTIDATPFRQWYEGHYVLPLGRKRGAK 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,550
Number of Sequences: 438
Number of extensions: 3781
Number of successful extensions: 28
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)