Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12f03
(823 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 37 0.003
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 33 0.037
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 31 0.26
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz... 29 0.80
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 1.1
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 1.1
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 28 1.4
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 28 1.8
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo... 27 2.4
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 27 2.4
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 27 3.2
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 26 7.4
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 26 7.4
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 26 7.4
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 7.4
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 26 7.4
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.8
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 37.1 bits (82), Expect = 0.003
Identities = 43/161 (26%), Positives = 79/161 (49%)
Frame = -3
Query: 737 KALLQNARALRMIGQFDEAEKKLRKAEILSPNSEEMKTEAKLLQKLKVSCNKSKLLAEKT 558
+A +Q+ R + G + + RK EI + E +K A+ Q + ++ K EK
Sbjct: 32 RAQIQSFREKELEGSQTKFKVLSRKLEISTQAMESLKQTAESSQHAEEILSREK---EK- 87
Query: 557 IGLAQHSAVSDNFKVEVENLISNFKENINLCKLTLPYNLDTAEVEFIKSTCIRENLFFNK 378
+A+ +++N + +E+ + KE + L L +T+E + +S EN N
Sbjct: 88 FRIAKLLNITENEIMSLESQLQKMKEQL----LQLEERENTSE-DICQS---EENA--NM 137
Query: 377 IEKDFVSSKQEELSTCEKNTDNKHYLLGKENDMETEIDIAN 255
++ +F S +L T E NT NK ++ END++T + I+N
Sbjct: 138 LKLNFYHSLGFDLETAE-NTGNKRVIIHTENDLQT-VQISN 176
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 33.5 bits (73), Expect = 0.037
Identities = 16/47 (34%), Positives = 30/47 (63%)
Frame = -3
Query: 743 NAKALLQNARALRMIGQFDEAEKKLRKAEILSPNSEEMKTEAKLLQK 603
+AKA ++A+AL + ++DEA++ +R ++ PN + +K LQK
Sbjct: 135 HAKAYYRSAKALVALKRYDEAKECIRLCSLVHPNDPAILALSKELQK 181
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 30.7 bits (66), Expect = 0.26
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Frame = -3
Query: 665 KAEILSPNSEEMKTEAKLLQKLKVSCNKSKLLAEKTIGLAQHSAVSDNFKVEV-ENLISN 489
K+ ++S + +K+ +KL+VS + + L +K GLAQ + N K+++ E SN
Sbjct: 198 KSALVSDLASLQSDHSKVCEKLEVSSRQVQDLEKKLAGLAQQN-TELNEKIQLFEQKRSN 256
Query: 488 FKENINLCKL--TLPYNLDTAEVE 423
+ + N+ K+ T P ++ E E
Sbjct: 257 YSSDGNISKILETDPTSIKELEEE 280
>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 451
Score = 29.1 bits (62), Expect = 0.80
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = -3
Query: 680 EKKLRKAEILSPNSEEMKTEAKLLQKLKVSCNKSKLL 570
E +++K+E+L+ N+E+MK L + K+S + K L
Sbjct: 35 ELRIKKSEVLAANAEDMKAAKLLAESGKLSSSMVKRL 71
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 542 HSAVSDNFKVEVENLISNFKENINL 468
H + SDNFKV + N N KE+ NL
Sbjct: 166 HDSESDNFKVVLSNCAINSKEDNNL 190
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 28.7 bits (61), Expect = 1.1
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Frame = -3
Query: 659 EILSPNSEEMKTEAKLLQKLKVSCNKSKLLAEKTIGLAQHSAVSDNFKVEVENL---ISN 489
E+LS +S+E +++ KL+ + EKTI + S FK EVE L I+
Sbjct: 553 EVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRENEESI--SLFKEEVEKLTDEITQ 610
Query: 488 FKENIN-LCKL--TLPYNLDTAEVEFIKSTCIRENLFFNKIEKDFVSSKQEELSTCEKNT 318
E N C L L T E E K+ + N +E+ ++ E S ++N
Sbjct: 611 LSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTSNLLEQ-LKMTEAEVDSLRKENE 669
Query: 317 DNKHYLLGKENDM 279
+NK + KE+++
Sbjct: 670 ENKQVIALKESEL 682
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3
Query: 683 AEKKLRKAEILSPNSEEMKTEAKLL 609
A +KL +AEI+ PNS +KT+ LL
Sbjct: 255 AYEKLAEAEIIFPNSRYLKTQRALL 279
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 27.9 bits (59), Expect = 1.8
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Frame = -3
Query: 716 RALRMIGQFDEAEKKLRKAEILSPNSEEMKTEAKLLQKLKVSCNKSKLLAEK----TIGL 549
R R+ +FD KL K E+K + L KL V+ + + E+ T +
Sbjct: 764 RVSRLANEFDARIAKLEKMPFSPAKEAELKKISVDLSKLVVAAVRKHAMKERIAKITKQV 823
Query: 548 AQH-SAVSDNFKVEVENLISN-FKEN 477
+H A++ + EV N+++ FKEN
Sbjct: 824 QEHVKAINAAEQKEVVNVVTEYFKEN 849
>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 400
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -3
Query: 653 LSPNSEEMKTEAKL-LQKLKVSCNKSKLLAEKTIGLAQHSAVSDNFKVEVENLISNFKE 480
+ P +E K +A+L QKLK+ + +LL + L ++ D F +EN +FKE
Sbjct: 42 MKPYAELEKRKAELHAQKLKLVQKRQQLLRDNYNVLVDYARNQDAFYQLLENSRHDFKE 100
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = -3
Query: 449 YNLDTAEVEFIKSTCIRENLFFNKIEKDFVSSKQEELST 333
+++D +E+I S C++ FF+ ++ +SS + +T
Sbjct: 148 FHIDDVPLEWISSICMQVQSFFSPAAREAISSLKSRTTT 186
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/72 (19%), Positives = 31/72 (43%)
Frame = -3
Query: 461 LTLPYNLDTAEVEFIKSTCIRENLFFNKIEKDFVSSKQEELSTCEKNTDNKHYLLGKEND 282
+ + +LD A ++ + L+ K K+++ K K+ ++ N+
Sbjct: 1 MAIESDLDGASMDELAGKSYEALLYLMNKNKKRKPEKKDDKEKSSKKVQKKNKVIESLNE 60
Query: 281 METEIDIANSND 246
ME E++ N N+
Sbjct: 61 MEVEMEDENENE 72
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 25.8 bits (54), Expect = 7.4
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 614 IWLQFSFPRYWDSIFQLFVVSSLLHQTDLSFL---RL*HFVKVLWHCSTKN 757
+W + S P + + VSSL + +D FL R+ FV++ W+ TKN
Sbjct: 185 LWSEISGPSIMELSPTTYEVSSLAYSSDGGFLAIARVNGFVEI-WNRKTKN 234
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = -3
Query: 731 LLQNARALRMIGQFDEAEKKLRKAEILSPNSEEMKTEAKLLQ 606
L ++ R L IG+ DEA + + K L P+S+ ++TE K ++
Sbjct: 199 LSESPRYLVSIGKDDEAIQVMCKNAELPPDSDIIQTEYKQIK 240
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 314 YLYFFHKYLTLPVCL 358
+ YFFHKY T P+ L
Sbjct: 287 FSYFFHKYFTFPLRL 301
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = +2
Query: 587 YMILLIFAVIWLQFSFPRYWDSIFQLFVVSSLLHQTDLSFLRL*HFVKV 733
Y I L IW ++FP S F L + S+ T F L KV
Sbjct: 183 YRIQLTDGKIWFLYAFPTSSSSTFNLTLASNSQLTTSTKFTGLIQICKV 231
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.8 bits (54), Expect = 7.4
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +1
Query: 250 FEFAISISVSMSFSFPKR*CLL 315
F+ A+ +++ SFSF K+ C++
Sbjct: 181 FQLAVGLTIKKSFSFSKKSCVI 202
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 9.8
Identities = 23/110 (20%), Positives = 45/110 (40%)
Frame = -3
Query: 638 EEMKTEAKLLQKLKVSCNKSKLLAEKTIGLAQHSAVSDNFKVEVENLISNFKENINLCKL 459
EE+ E + + ++++ L G+ + S VS+N + E + E +N
Sbjct: 3934 EELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVN---- 3989
Query: 458 TLPYNLDTAEVEFIKSTCIRENLFFNKIEKDFVSSKQEELSTCEKNTDNK 309
+P +L + E + E+L + + + S+ E K DNK
Sbjct: 3990 DIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNK 4039
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,698
Number of Sequences: 5004
Number of extensions: 56027
Number of successful extensions: 195
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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