Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12f03
(823 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0065 + 14192725-14192813,14193004-14193088,14193971-141940... 42 6e-04
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 38 0.007
10_08_0435 + 17905728-17905901,17906608-17906931,17907205-179073... 38 0.013
12_01_0295 + 2235209-2235263,2236182-2236361,2236478-2236567,223... 35 0.068
11_01_0294 + 2212807-2212876,2213664-2213843,2214505-2214594,221... 34 0.12
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278... 33 0.27
03_05_0626 + 26233178-26233233,26234083-26234284,26234800-262349... 33 0.27
08_02_1530 + 27670400-27671008 32 0.63
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 32 0.63
09_06_0240 + 21797458-21799369,21799636-21799784 31 0.84
07_03_0250 - 15822602-15822650,15822744-15822814,15822908-158230... 31 1.1
07_03_0249 - 15816515-15816868,15817749-15817958,15818051-158182... 30 1.9
08_02_1322 + 26131395-26131599,26132382-26132468,26133119-261333... 30 2.6
08_01_0914 + 9010613-9013316,9013537-9013748 30 2.6
12_02_0454 + 19199063-19200757,19202201-19202287 29 3.4
10_08_0533 + 18592177-18592581,18592674-18593906 29 4.5
09_04_0139 + 15030753-15031208,15031298-15031523,15031599-150319... 29 4.5
02_05_0025 - 25165438-25165708,25165807-25166048,25166191-251662... 29 5.9
08_02_1529 + 27668348-27669079 28 7.8
08_02_1027 + 23749400-23750698 28 7.8
07_03_1287 + 25510813-25510862,25511326-25511504,25511715-255120... 28 7.8
06_03_1131 + 27872870-27872958,27873036-27873281,27874058-278741... 28 7.8
>03_03_0065 +
14192725-14192813,14193004-14193088,14193971-14194040,
14194730-14194827,14194931-14195101,14196192-14196224,
14196762-14196820,14197143-14197190,14197399-14197480,
14198317-14198475,14199036-14199093,14199801-14199949,
14200403-14200503,14200574-14200643,14201088-14201147,
14201883-14201939,14202247-14202315,14202485-14202562,
14202996-14203097,14203203-14203274,14203361-14203648
Length = 665
Score = 41.9 bits (94), Expect = 6e-04
Identities = 26/87 (29%), Positives = 44/87 (50%)
Frame = -3
Query: 821 CYNKINXPXKTCIACNELNRLNSLWNNAKALLQNARALRMIGQFDEAEKKLRKAEILSPN 642
CY K+ K+ CN++ N + + KAL + + ++G FD+A+K K + +
Sbjct: 496 CYQKMGEYRKSIDTCNKVLEANPV--HVKALYRRGMSYMLLGDFDDAKKDFEKMIAVDKS 553
Query: 641 SEEMKTEAKLLQKLKVSCNKSKLLAEK 561
SE T A L KLK + +++ A K
Sbjct: 554 SEPDATAA--LNKLKQTIQETEKKARK 578
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 38.3 bits (85), Expect = 0.007
Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 3/164 (1%)
Frame = -3
Query: 737 KALLQNARALR--MIGQFDEAEKKLRKAEILSPNSEEMKTEAKLLQKLKVSCNKSKLLAE 564
+ALLQ A + Q +EAE ++ AE + E++ E++ KL S + KLL E
Sbjct: 453 EALLQTLHATEEALKLQLEEAEARVEVAEKKGSDLEQLLGESE--NKLVASSGELKLLEE 510
Query: 563 KTIGLAQHSAVSDNFKVEVENLISNFKENINLCKLTLPYNLDTAEVEFIKSTCIRENLFF 384
+ A SA + E N + +KE IN + +L ++ + + +
Sbjct: 511 RVQQEAASSAEKEKLLEEATNSVEAYKEKINELQASLDSTTSKNQLLEQEVKDLSDKFTE 570
Query: 383 NKIEKDFVSSKQEEL-STCEKNTDNKHYLLGKENDMETEIDIAN 255
++ + V + EL S + + + D+E E++ AN
Sbjct: 571 HQEQAHSVHERSLELESLLHTSKSDAEVAHTRTQDLENELNTAN 614
>10_08_0435 +
17905728-17905901,17906608-17906931,17907205-17907321,
17908418-17908597,17909064-17909190,17909327-17909440,
17909794-17909909
Length = 383
Score = 37.5 bits (83), Expect = 0.013
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Frame = -3
Query: 821 CYNKINXPXKTCIACNELNRLNSLWNNAKALLQNARALRMIGQFDEAEKKLRKAEILSPN 642
C+ K+ +T C + LN + KALL+ A + +DEA ++K L P+
Sbjct: 261 CFLKLGKYDETIKECTKALELNPSY--LKALLRRGEAHEKLEHYDEAIADMKKIIELDPS 318
Query: 641 SEEMKTEAKLLQKLKVSCNKSKLLAEKTIGLAQH--SAVSDNFKVEVEN 501
+E+ K L+ L + K + + E+ IG + ++V F + V+N
Sbjct: 319 NEQAKRSLFRLEPL--AAEKREKMKEEMIGKLKDLGNSVLGRFGMSVDN 365
>12_01_0295 +
2235209-2235263,2236182-2236361,2236478-2236567,
2236947-2237131,2237200-2237358,2237437-2237589,
2237938-2238264
Length = 382
Score = 35.1 bits (77), Expect = 0.068
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -3
Query: 746 NNAKALLQNARALRMIGQFDEAEKKLRKAEILSPNSEEMKTEAK-LLQKLKVSCNKSKLL 570
NN KAL + +A +GQ + A + KA+ SP +E++ E + L ++ K K K L
Sbjct: 281 NNVKALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQRELRSLAEQDKALYQKQKEL 340
Query: 569 AEKTIG 552
+ G
Sbjct: 341 YKGLFG 346
>11_01_0294 +
2212807-2212876,2213664-2213843,2214505-2214594,
2215054-2215238,2215399-2215521,2215593-2215745,
2216090-2216416
Length = 375
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -3
Query: 746 NNAKALLQNARALRMIGQFDEAEKKLRKAEILSPNSEEMKTEAK-LLQKLKVSCNKSKLL 570
NN KAL + +A +GQ + A + KA+ SP +E++ E + L ++ K K K L
Sbjct: 274 NNVKALFRRGKARAELGQTESAREDFLKAKKHSPEDKEIQRELRSLAEQDKALYQKQKEL 333
Query: 569 AEKTIG 552
+ G
Sbjct: 334 YKGLFG 339
>05_01_0356 +
2785410-2785670,2785843-2785960,2786800-2786891,
2787114-2787176,2787299-2787397,2787726-2787884,
2788420-2788491,2788567-2788699,2788813-2788877,
2789016-2789091,2789236-2789337,2789524-2789716,
2790576-2790654,2792939-2793007,2793261-2793311,
2793680-2793742,2793926-2794041,2794263-2794347,
2794898-2794957,2795594-2795639,2796011-2796084,
2796350-2796400,2796474-2796674,2796747-2796791,
2797063-2797156,2797226-2797371,2797510-2797739,
2798136-2798196,2798290-2798347,2799020-2799513
Length = 1151
Score = 33.1 bits (72), Expect = 0.27
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = -3
Query: 746 NNAKALLQNARALRMIGQFDEAEKKLRKAEILSPNSEEMKTEAKLLQKLKVSCNK 582
NN LL+ A+ +IG+ DEA KA ++ PN E +L K K K
Sbjct: 682 NNVHILLEIAKVEAIIGRNDEAIMNFEKARLIDPNIMTYMDEYAILLKSKSDYTK 736
>03_05_0626 +
26233178-26233233,26234083-26234284,26234800-26234968,
26235767-26238768
Length = 1142
Score = 33.1 bits (72), Expect = 0.27
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -3
Query: 734 ALLQNARALRMIGQFDEAEKKLRKAEILSPNSEEMKTEA 618
AL + A ALR G+ DEAE++L+K +L E+++ +
Sbjct: 591 ALKKKALALRREGKVDEAEEELKKGSVLEKQLEDLENSS 629
>08_02_1530 + 27670400-27671008
Length = 202
Score = 31.9 bits (69), Expect = 0.63
Identities = 21/82 (25%), Positives = 38/82 (46%)
Frame = -3
Query: 737 KALLQNARALRMIGQFDEAEKKLRKAEILSPNSEEMKTEAKLLQKLKVSCNKSKLLAEKT 558
+ L +A A + E+ L +I+ PNS +K QK +++C + +LLA +
Sbjct: 114 RVLKLSAEAREVAISMLESSLHLLLKQIVMPNSSRWSLVSKAFQKARIACQEEQLLALEL 173
Query: 557 IGLAQHSAVSDNFKVEVENLIS 492
S V F+ ++N +S
Sbjct: 174 DISDIESRVETLFRRLIQNRVS 195
>03_01_0049 +
418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 31.9 bits (69), Expect = 0.63
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Frame = -3
Query: 758 NSLWNNAKALLQNARALRMIGQFDEAEKKLRKAEILSPNSEEMKTEAKL----------- 612
N L N N +G D +++ L AE EE++ EAK+
Sbjct: 275 NVLQGNTPKSFGNGFGQLSLGTSDSSKELLEAAE---ETIEELRDEAKMWERHSRKLKAD 331
Query: 611 LQKLKVSCN-KSKLLAEKTIGLAQHSAVSDNFKVEVENLISNFKE 480
L+ LK C+ KSK E L+ A D+++ E+E L S+ KE
Sbjct: 332 LEMLKKECSEKSKQQTELEAELSAAHAERDSYRQEIEELKSSMKE 376
>09_06_0240 + 21797458-21799369,21799636-21799784
Length = 686
Score = 31.5 bits (68), Expect = 0.84
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -3
Query: 821 CYNKINXPXKTCIACNELN-RLNSLWNNAKALLQNARALRMIGQFDEAEKKLRKAEILSP 645
CY +++ P A NE N L++ +KALL+ AR +G+ D A + + K + P
Sbjct: 92 CYMQMSPPDHYR-AINECNLALDASPRYSKALLKRARCFEALGRLDLAYRDVAKVLAVEP 150
Query: 644 NS 639
N+
Sbjct: 151 NN 152
>07_03_0250 -
15822602-15822650,15822744-15822814,15822908-15823006,
15823235-15823309,15823808-15823885,15823990-15824098,
15824167-15824216,15824310-15824411,15824994-15825071,
15825419-15825685,15825863-15825962,15826137-15826315
Length = 418
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 398 ENLFFNKIEKDFVSSKQEELSTCEKNT-DNKHYLLGKENDMETEID 264
EN+ NK+ + +S K +EL C T + H LL K+N++ I+
Sbjct: 352 ENIQQNKVNEQ-ISEKIQELENCSAQTQETLHALLQKQNELANHIE 396
>07_03_0249 -
15816515-15816868,15817749-15817958,15818051-15818245,
15818318-15818393,15819982-15820021,15820155-15820283,
15820363-15820405
Length = 348
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 764 RLNSLWNNAKALLQNARALRMIGQFDEAEKKLRKAEILSPNSEEMKTEA 618
+L+ + K LL+ L G+ DEAE +RK E+L+ + +A
Sbjct: 128 QLSIIEEKVKKLLEQIEELGEAGKVDEAEALMRKVELLNAEKTALTNQA 176
>08_02_1322 +
26131395-26131599,26132382-26132468,26133119-26133372,
26133430-26133526,26133613-26133693,26133782-26133976,
26134093-26134182,26134296-26134471,26134565-26134687,
26134799-26134945,26135027-26135163,26135247-26135364,
26135462-26135518
Length = 588
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -3
Query: 773 ELNRLNSLWNNAKALLQNARALRMIGQFDEAEKKLRKA-EILSPNSEEMKTEAKLLQKLK 597
+LN + A A + AL +G++ A K+ KA + + +S + E K ++LK
Sbjct: 401 DLNNTEKI-ETAGAKKEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEKKQSKQLK 459
Query: 596 VSCN 585
V+CN
Sbjct: 460 VTCN 463
>08_01_0914 + 9010613-9013316,9013537-9013748
Length = 971
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -2
Query: 243 NIQVVDLILLSFNRV-GSFALSTVITTPSADRFLFFFQSLKNLLTGTFNTREAVQNFSLL 67
NI + L FNR+ GS L + P +RF + ++ TF+ A+++ L
Sbjct: 248 NISSIRFFDLGFNRLSGSLPLDVGVKLPRINRFNTLANHFEGIIPPTFSNASALESLLLR 307
Query: 66 GS 61
G+
Sbjct: 308 GN 309
>12_02_0454 + 19199063-19200757,19202201-19202287
Length = 593
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -3
Query: 788 CIACNELNRLNSLWNN---AKALLQNARALRMIGQFDEAEKKLRKAEILSPNSEEM 630
C+ACN+ + + W N +K LRM+ F+E E+ L+ AE P ++
Sbjct: 312 CVACNKKFKSDKQWKNHEQSKKHRDKVSELRMV--FEEEEEALKDAEEEEPEEVDV 365
>10_08_0533 + 18592177-18592581,18592674-18593906
Length = 545
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 779 CNELNRLNSLWNNAKALLQNARALRMIGQFDEAEKKLRK 663
CN+L +S K L+Q+ R + F E+EKK+ K
Sbjct: 281 CNDLMTWHSYATIGKVLMQSGMEERALQAFQESEKKIAK 319
>09_04_0139 +
15030753-15031208,15031298-15031523,15031599-15031981,
15032353-15032685,15032902-15033010,15033089-15033465
Length = 627
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = -3
Query: 566 EKTIGLAQHSAVSDNFKVEVENLISNFKENINLCKLTLPYNLDTAEVEFIKSTCIRENLF 387
EK + +HS++ +V VE + K + P+ L +V+ + + CI +N
Sbjct: 265 EKELFNLRHSSL----RVTVERAFGSLKRRWKILDDATPFFLYPTQVDIVVACCIIQNWI 320
Query: 386 FNKIEKDFVSSKQE 345
DF+ S++E
Sbjct: 321 IEDGGDDFIISEEE 334
>02_05_0025 -
25165438-25165708,25165807-25166048,25166191-25166222,
25167174-25167231,25167331-25167438
Length = 236
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = -3
Query: 692 FDEAEKKLRKAEILSPNSEEMKTEAKLLQKLKVSCNKSKLLAE-KTIGLAQHSAVSDNFK 516
+ E EK+ RK + E+ +L +K++V CN+ + + K + AQ ++ K
Sbjct: 147 WSEEEKRKRKKKKKGAEMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAE--K 204
Query: 515 VEVENLISNFKENINL 468
+ ++ + +K++I L
Sbjct: 205 IRIQKWYNIYKDHITL 220
>08_02_1529 + 27668348-27669079
Length = 243
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = -3
Query: 686 EAEKKLRKAEILSPNSEEMKTEAKLLQKLKVSCNKSKLLAEKTIGLAQHSAVSDNFKVEV 507
E+ L +I+ PNS +K QK +++C + +L A + S V F+ +
Sbjct: 172 ESSLHLLLKQIVKPNSSRWSLVSKAFQKARIACQEEQLQALELDISDLESGVETLFRRLI 231
Query: 506 ENLIS 492
++ +S
Sbjct: 232 QSRVS 236
>08_02_1027 + 23749400-23750698
Length = 432
Score = 28.3 bits (60), Expect = 7.8
Identities = 30/151 (19%), Positives = 61/151 (40%)
Frame = -3
Query: 794 KTCIACNELNRLNSLWNNAKALLQNARALRMIGQFDEAEKKLRKAEILSPNSEEMKTEAK 615
K +A +EL + N+KALL+N + + A+ K E+ + + E+ +
Sbjct: 208 KLSLAQSELTNARTEMENSKALLKNTEEKLQVALEEAAQLKFESDELAAASKEKERGLVD 267
Query: 614 LLQKLKVSCNKSKLLAEKTIGLAQHSAVSDNFKVEVENLISNFKENINLCKLTLPYNLDT 435
++ + K+K E+ L + V + + ++ + N+ K +L +
Sbjct: 268 CIKMFEGDLIKAK---EENNKLIESQRVIRDENSRLREMLKHAVCEANVAKESL--EIAR 322
Query: 434 AEVEFIKSTCIRENLFFNKIEKDFVSSKQEE 342
AE +K + I +D+ S K E
Sbjct: 323 AENSQLKEDISEKENTLQSIIQDYESLKVSE 353
>07_03_1287 +
25510813-25510862,25511326-25511504,25511715-25512037,
25512160-25513950
Length = 780
Score = 28.3 bits (60), Expect = 7.8
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Frame = -3
Query: 770 LNRLNSLWNNAKALLQNARALRMIGQFDEAEKKLRKAEILSPNSEEMKTEAKLLQKLKVS 591
L RL SL + +QN + G E + +I P E + + K L++++ +
Sbjct: 405 LRRLRSLKSELATYVQNVISEEAEGLVKEHGPDDAQ-QISGPVKEALASAQKELEEVRAN 463
Query: 590 CNKSKLLAE--KTIGLAQHSAVSDNFKVEVENLISNFKENINLCKLTLPYNLDTAEVEFI 417
K+K A+ K S + + VE +I +C L N E+E++
Sbjct: 464 IEKAKNEAKLFKLAATTLRSEMDNEKSSLVELQQREGMASIAICALEAELNRTKQEIEYV 523
Query: 416 KS 411
KS
Sbjct: 524 KS 525
>06_03_1131 +
27872870-27872958,27873036-27873281,27874058-27874163,
27874665-27875209,27875455-27875914,27876234-27876319,
27877092-27877194
Length = 544
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -3
Query: 746 NNAKALLQNARALRMIGQFDEAEKKLRKAEILSPNSEEMKTEAKLLQKLKVS 591
N +ALL A+ + IG+F+EAE + +L E +T +LQ LK S
Sbjct: 448 NFVEALLFLAKHCKSIGRFEEAEHYCTR--LLDYTGPERETAKSILQGLKRS 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,471,679
Number of Sequences: 37544
Number of extensions: 270360
Number of successful extensions: 688
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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