Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12f03
(823 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical pr... 35 0.061
AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein... 35 0.061
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 34 0.14
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 34 0.14
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 34 0.14
Z50863-5|CAA90738.2| 746|Caenorhabditis elegans Hypothetical pr... 33 0.33
Z50863-4|CAL36493.1| 412|Caenorhabditis elegans Hypothetical pr... 33 0.33
Z49153-2|CAA89023.2| 746|Caenorhabditis elegans Hypothetical pr... 33 0.33
Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical pr... 32 0.57
Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical pr... 32 0.57
Z98866-18|CAB11555.2| 387|Caenorhabditis elegans Hypothetical p... 31 1.3
U00052-7|AAK21422.2| 232|Caenorhabditis elegans Fatty acid/reti... 30 1.7
Z82062-3|CAB04892.1| 384|Caenorhabditis elegans Hypothetical pr... 29 4.0
AF016687-8|AAK72065.1| 737|Caenorhabditis elegans Hypothetical ... 28 9.3
AF016687-7|AAK72063.1| 881|Caenorhabditis elegans Hypothetical ... 28 9.3
AF003389-1|AAC71138.2| 865|Caenorhabditis elegans Hypothetical ... 28 9.3
>Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical
protein C44H4.3 protein.
Length = 680
Score = 35.1 bits (77), Expect = 0.061
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 26/181 (14%)
Frame = -3
Query: 737 KALLQNARALRMIGQ-FDEAEKKLRKAEILSPNSEEMKTEA----KLLQKLKVSCNKSKL 573
K +L N R ++ F E +++ + N +E+ T A ++L L + CNK +
Sbjct: 87 KLILSNNRIEKIHDHAFTGLENVMQELSLSENNLKEVPTSALAGLRVLNILSLKCNKIEN 146
Query: 572 LAEKT-----------IGLAQH-SAVSDNF---KVEVENLI--SNFKENINLCKLTLPYN 444
+ K +G Q S +D F K+ ++NLI +N + N
Sbjct: 147 ITTKAFVNMTSLIDVNLGCNQICSMAADTFANVKMSLQNLILDNNCMTEFPSKAVRNMNN 206
Query: 443 LDTAEVEFIKSTCIRENLFFNKIEKDFVSSKQEELSTCE----KNTDNKHYLLGKENDME 276
L +++ K IR+N F N +S +S + +NT N HYL EN+++
Sbjct: 207 LIALHIKYNKINAIRQNDFVNLTSLSMLSLNGNNISEIKGGALQNTPNLHYLYLNENNLQ 266
Query: 275 T 273
T
Sbjct: 267 T 267
>AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein
protein.
Length = 680
Score = 35.1 bits (77), Expect = 0.061
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 26/181 (14%)
Frame = -3
Query: 737 KALLQNARALRMIGQ-FDEAEKKLRKAEILSPNSEEMKTEA----KLLQKLKVSCNKSKL 573
K +L N R ++ F E +++ + N +E+ T A ++L L + CNK +
Sbjct: 87 KLILSNNRIEKIHDHAFTGLENVMQELSLSENNLKEVPTSALAGLRVLNILSLKCNKIEN 146
Query: 572 LAEKT-----------IGLAQH-SAVSDNF---KVEVENLI--SNFKENINLCKLTLPYN 444
+ K +G Q S +D F K+ ++NLI +N + N
Sbjct: 147 ITTKAFVNMTSLIDVNLGCNQICSMAADTFANVKMSLQNLILDNNCMTEFPSKAVRNMNN 206
Query: 443 LDTAEVEFIKSTCIRENLFFNKIEKDFVSSKQEELSTCE----KNTDNKHYLLGKENDME 276
L +++ K IR+N F N +S +S + +NT N HYL EN+++
Sbjct: 207 LIALHIKYNKINAIRQNDFVNLTSLSMLSLNGNNISEIKGGALQNTPNLHYLYLNENNLQ 266
Query: 275 T 273
T
Sbjct: 267 T 267
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 33.9 bits (74), Expect = 0.14
Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 6/166 (3%)
Frame = -3
Query: 722 NARALRMIGQFDEAEKKLR--KAEILSPNSEEMKTEAKLLQKLK----VSCNKSKLLAEK 561
N + + + G+ +A KKL +A + N ++ EA+ K V + K+ AEK
Sbjct: 925 NEQKVALEGKLADASKKLEVEEARAVEINKQKKLVEAECADLKKNCQDVDLSLRKVEAEK 984
Query: 560 TIGLAQHSAVSDNFKVEVENLISNFKENINLCKLTLPYNLDTAEVEFIKSTCIRENLFFN 381
Q A+ D + + EN+ KE N + D E +NL N
Sbjct: 985 NAKEHQIRALQDEMRQQDENISKLNKERKNQEEQNKKLTEDLQAAE-------EQNLAAN 1037
Query: 380 KIEKDFVSSKQEELSTCEKNTDNKHYLLGKENDMETEIDIANSNDE 243
K++ + S ++ T E+ N+ + + E E+ IA E
Sbjct: 1038 KLKAKLMQSLEDSEQTMEREKRNRADMDKNKRKAEGELKIAQETLE 1083
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 33.9 bits (74), Expect = 0.14
Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 6/166 (3%)
Frame = -3
Query: 722 NARALRMIGQFDEAEKKLR--KAEILSPNSEEMKTEAKLLQKLK----VSCNKSKLLAEK 561
N + + + G+ +A KKL +A + N ++ EA+ K V + K+ AEK
Sbjct: 925 NEQKVALEGKLADASKKLEVEEARAVEINKQKKLVEAECADLKKNCQDVDLSLRKVEAEK 984
Query: 560 TIGLAQHSAVSDNFKVEVENLISNFKENINLCKLTLPYNLDTAEVEFIKSTCIRENLFFN 381
Q A+ D + + EN+ KE N + D E +NL N
Sbjct: 985 NAKEHQIRALQDEMRQQDENISKLNKERKNQEEQNKKLTEDLQAAE-------EQNLAAN 1037
Query: 380 KIEKDFVSSKQEELSTCEKNTDNKHYLLGKENDMETEIDIANSNDE 243
K++ + S ++ T E+ N+ + + E E+ IA E
Sbjct: 1038 KLKAKLMQSLEDSEQTMEREKRNRADMDKNKRKAEGELKIAQETLE 1083
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 33.9 bits (74), Expect = 0.14
Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 6/166 (3%)
Frame = -3
Query: 722 NARALRMIGQFDEAEKKLR--KAEILSPNSEEMKTEAKLLQKLK----VSCNKSKLLAEK 561
N + + + G+ +A KKL +A + N ++ EA+ K V + K+ AEK
Sbjct: 925 NEQKVALEGKLADASKKLEVEEARAVEINKQKKLVEAECADLKKNCQDVDLSLRKVEAEK 984
Query: 560 TIGLAQHSAVSDNFKVEVENLISNFKENINLCKLTLPYNLDTAEVEFIKSTCIRENLFFN 381
Q A+ D + + EN+ KE N + D E +NL N
Sbjct: 985 NAKEHQIRALQDEMRQQDENISKLNKERKNQEEQNKKLTEDLQAAE-------EQNLAAN 1037
Query: 380 KIEKDFVSSKQEELSTCEKNTDNKHYLLGKENDMETEIDIANSNDE 243
K++ + S ++ T E+ N+ + + E E+ IA E
Sbjct: 1038 KLKAKLMQSLEDSEQTMEREKRNRADMDKNKRKAEGELKIAQETLE 1083
>Z50863-5|CAA90738.2| 746|Caenorhabditis elegans Hypothetical
protein C14H10.2a protein.
Length = 746
Score = 32.7 bits (71), Expect = 0.33
Identities = 26/124 (20%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Frame = -3
Query: 695 QFDEAEKKLRKAEILSPN-SEEMKTEAKLLQKLKVSCNKSKLLAEKTIGLAQHSAVSDNF 519
Q D ++K KAE + + +EE+++ +K L K++ + K L++ +++
Sbjct: 451 QVDALQQKFEKAEAANVSINEELRSASKELGKIRFQ------MQGKESDLSRERKMTEAL 504
Query: 518 KVEVENLISNFKENI-----NLCKLTLPYNLDTAEVEFIKSTCIRENLFFNKIEKDFVSS 354
++++++S+ +E L KL L AE+E + + F +EK++ +
Sbjct: 505 SAQLQSVVSSSQEEALKKEEELKKLKATVELQQAEIEKMHEDKKEADQKFKNLEKEYAAY 564
Query: 353 KQEE 342
+ E+
Sbjct: 565 RDEQ 568
>Z50863-4|CAL36493.1| 412|Caenorhabditis elegans Hypothetical
protein C14H10.2b protein.
Length = 412
Score = 32.7 bits (71), Expect = 0.33
Identities = 26/124 (20%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Frame = -3
Query: 695 QFDEAEKKLRKAEILSPN-SEEMKTEAKLLQKLKVSCNKSKLLAEKTIGLAQHSAVSDNF 519
Q D ++K KAE + + +EE+++ +K L K++ + K L++ +++
Sbjct: 117 QVDALQQKFEKAEAANVSINEELRSASKELGKIRFQ------MQGKESDLSRERKMTEAL 170
Query: 518 KVEVENLISNFKENI-----NLCKLTLPYNLDTAEVEFIKSTCIRENLFFNKIEKDFVSS 354
++++++S+ +E L KL L AE+E + + F +EK++ +
Sbjct: 171 SAQLQSVVSSSQEEALKKEEELKKLKATVELQQAEIEKMHEDKKEADQKFKNLEKEYAAY 230
Query: 353 KQEE 342
+ E+
Sbjct: 231 RDEQ 234
>Z49153-2|CAA89023.2| 746|Caenorhabditis elegans Hypothetical
protein C14H10.2a protein.
Length = 746
Score = 32.7 bits (71), Expect = 0.33
Identities = 26/124 (20%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Frame = -3
Query: 695 QFDEAEKKLRKAEILSPN-SEEMKTEAKLLQKLKVSCNKSKLLAEKTIGLAQHSAVSDNF 519
Q D ++K KAE + + +EE+++ +K L K++ + K L++ +++
Sbjct: 451 QVDALQQKFEKAEAANVSINEELRSASKELGKIRFQ------MQGKESDLSRERKMTEAL 504
Query: 518 KVEVENLISNFKENI-----NLCKLTLPYNLDTAEVEFIKSTCIRENLFFNKIEKDFVSS 354
++++++S+ +E L KL L AE+E + + F +EK++ +
Sbjct: 505 SAQLQSVVSSSQEEALKKEEELKKLKATVELQQAEIEKMHEDKKEADQKFKNLEKEYAAY 564
Query: 353 KQEE 342
+ E+
Sbjct: 565 RDEQ 568
>Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical protein
C14B4.2 protein.
Length = 1776
Score = 31.9 bits (69), Expect = 0.57
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = -3
Query: 812 KINXPXKTCIACNELNRLNSLWNNAKALLQNARALRMIGQ-FDEAEKKLRKAEILSPNSE 636
KI K C+ C EL+ N+ + + + N +L G ++ L I S N
Sbjct: 1210 KIRNVEKICVECGELSIYNAEIESCRVISVNCESLTASGHVLGDSSTNL---TIHSTNIH 1266
Query: 635 EMKTEAKLLQKLKVSCNKSKLL 570
K + + LQKL + C +S +L
Sbjct: 1267 S-KLDVENLQKLSIFCKRSSIL 1287
>Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical protein
C14B4.2 protein.
Length = 1776
Score = 31.9 bits (69), Expect = 0.57
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = -3
Query: 812 KINXPXKTCIACNELNRLNSLWNNAKALLQNARALRMIGQ-FDEAEKKLRKAEILSPNSE 636
KI K C+ C EL+ N+ + + + N +L G ++ L I S N
Sbjct: 1210 KIRNVEKICVECGELSIYNAEIESCRVISVNCESLTASGHVLGDSSTNL---TIHSTNIH 1266
Query: 635 EMKTEAKLLQKLKVSCNKSKLL 570
K + + LQKL + C +S +L
Sbjct: 1267 S-KLDVENLQKLSIFCKRSSIL 1287
>Z98866-18|CAB11555.2| 387|Caenorhabditis elegans Hypothetical
protein Y49E10.21 protein.
Length = 387
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = -3
Query: 659 EILSPNSEEMKTEAKLLQKLKVSCNKSKLLAEKTIGLAQHSAVSDNFKVEVENLISNFKE 480
E+L + E++ + LQKLK +K E L N K +VE+L + +K
Sbjct: 21 EVLKASEPELRQDLSSLQKLK--ADKESAAREALTALKTKKNELKNLKNDVESLKNEYKT 78
Query: 479 NINLCKLTLPYN-LDTAEVEFIKSTCIRENL 390
I + + L + LD +V + + E+L
Sbjct: 79 YIEMVENGLKQSGLDIKQVVQVFERVLEESL 109
>U00052-7|AAK21422.2| 232|Caenorhabditis elegans Fatty acid/retinol
binding proteinprotein 8 protein.
Length = 232
Score = 30.3 bits (65), Expect = 1.7
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Frame = -3
Query: 800 PXKTCIACNELNRLNSLWNNAKALLQ-NARALRMIGQFDEAEKKLRKAEILSPNSEEMKT 624
P + AC+ N S + AKALLQ ++ A ++ F EA K L NS++ +
Sbjct: 145 PDRVVWACHIFNNAKSAVSGAKALLQDDSEAAKIEEAFPEAVKLL--------NSKKFEA 196
Query: 623 EAKLLQKLK-VSCNKSKLLAEKTIGLAQHSAVSDN 522
+ ++ LK + C K + TI L +V N
Sbjct: 197 YSIIVNNLKPLDCVKDREQVFNTIKLMDKQSVLTN 231
>Z82062-3|CAB04892.1| 384|Caenorhabditis elegans Hypothetical
protein W02A11.5 protein.
Length = 384
Score = 29.1 bits (62), Expect = 4.0
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Frame = -3
Query: 572 LAEKTIGLAQHSAVSDNFKVEVENLISN-----FKENINLCKLTLPYNLDTAEVEFIKST 408
L +TIGL HS S+ V++ NL N +++ K + ++ + E +KS
Sbjct: 19 LRGETIGL--HSIFSEKSTVDISNLNGNTTLKRIEDSCEELKNEIREHVQVSSDE-LKSI 75
Query: 407 CIRENLFFNKIEKDFVSSKQ---EELSTCEKNTDN 312
+ F NKIE+ +S+Q E+L EK ++
Sbjct: 76 RTANSGFLNKIEESLKTSQQEAREDLKAIEKKNES 110
>AF016687-8|AAK72065.1| 737|Caenorhabditis elegans Hypothetical
protein T21D12.9c protein.
Length = 737
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/67 (23%), Positives = 33/67 (49%)
Frame = -2
Query: 231 VDLILLSFNRVGSFALSTVITTPSADRFLFFFQSLKNLLTGTFNTREAVQNFSLLGSCIP 52
++++ LS+N++ SF +S+ TP +++L +G+F ++ L + I
Sbjct: 293 LEVLDLSYNQIQSFHISSWSHTPKLKWLSLHSNRIQSLPSGSFRVLRQLEELILSANSID 352
Query: 51 DFLKKAL 31
K AL
Sbjct: 353 SLHKFAL 359
>AF016687-7|AAK72063.1| 881|Caenorhabditis elegans Hypothetical
protein T21D12.9a protein.
Length = 881
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/67 (23%), Positives = 33/67 (49%)
Frame = -2
Query: 231 VDLILLSFNRVGSFALSTVITTPSADRFLFFFQSLKNLLTGTFNTREAVQNFSLLGSCIP 52
++++ LS+N++ SF +S+ TP +++L +G+F ++ L + I
Sbjct: 293 LEVLDLSYNQIQSFHISSWSHTPKLKWLSLHSNRIQSLPSGSFRVLRQLEELILSANSID 352
Query: 51 DFLKKAL 31
K AL
Sbjct: 353 SLHKFAL 359
>AF003389-1|AAC71138.2| 865|Caenorhabditis elegans Hypothetical
protein F23H11.2 protein.
Length = 865
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/97 (20%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Frame = -3
Query: 524 NFKVEV-ENLISNFKENINLCKLTLPYNLDTAEVEFIKSTCIRENLFFNKIEKDFVSSKQ 348
NF+ V EN+++ F++ + C++ ++ E ++ + ENL + + E++ K+
Sbjct: 139 NFESRVQENILATFQKYLAHCQVAFCHSEQCGNDEHLRFVAVMENLRYEQEEREEKQRKR 198
Query: 347 EELSTCEKNTDNKH---YLLGKENDMETEIDIANSND 246
N +K + L + ++ +DIA+ D
Sbjct: 199 MAKRGKGVNALSKSAAAWTLLTQGNITEHLDIASDED 235
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,081,726
Number of Sequences: 27780
Number of extensions: 303369
Number of successful extensions: 975
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -