Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12f02
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    41   2e-04
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    26   5.4  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    26   7.1  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   9.4  

>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
 Frame = +3

Query: 198 QF*IMPQLLNFLDVGVEL-NSIDWGVLAIYTCKASCNKGSAYMLE 329
           +F I+P L++ +++     N++DWG+L+IY C ASC+  +  + E
Sbjct: 213 EFQILPTLISSMNIDHSAKNALDWGILSIYVCSASCDLANCGLAE 257


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 219 LLNFLDVGVELNSIDWGVLAIYTCKASCNKGSAYMLEYMIKQDLSD 356
           LL+ LD   E+    W   AI    ASC +G  Y+L+  +   L D
Sbjct: 40  LLSRLD-NPEIKERSWACSAISNIIASCTEGRLYLLKNGLVSKLID 84


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -2

Query: 680 C*AWGRR--CHTCIKSLRMGYTVCCCRY 603
           C A+G +   +TC+K L    + C CRY
Sbjct: 145 CSAYGMKENIYTCLKDLYCSVSCCDCRY 172


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 414 SFTDFFPYSSDTYVKKSFKPLN 479
           SF+ FF  SS TY+ K  + LN
Sbjct: 28  SFSSFFKKSSQTYLSKRSEKLN 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,354
Number of Sequences: 5004
Number of extensions: 58577
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)